Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60660g00011 ATGACGCATCACTTTGGCTCCCGAGAGTATCTACTTTTCCACTTCCAACTGCGCCTTCTCTCACACCTCACACCTCACCATTTTCTTCTTCTTTTCCCTTCCTCTCGCAATTCCATATCTTTCATTCTACTCCTTCTTCCTCCTCATCTCCAATTCACTCATTTCCCCTTCCTTCAAGGTTTGGACTTTGGACACGGTTTTGCATGTAAATCAGGAAACATGACTTCCACCCAAGATGTTACAGATAATGAAGCTGGTGAGAAAGAGCAGTCAGAATCACAGATGCAATCTTTATCTGAAAATGGAATTTCTGATCCAGGTGCTGGTATGCAGAATAATCAGTATGTAACACCTCCACCACTTGGAACTGGGTATGCTATGGCACCCCTTCCTTATCCATATCCAGATCCTTACTGCAGAAACATTTTTGCTCCGAACGATGCACAGCCATATCCCCCACAGCCATATGGTGGACATCCAATGGCCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTTTGCCATCTAATGCGATTGAGGAGCCTGTGTTTGTCAACGCAAAGCAGTATCACGGTATCTTAAGACGTAGGCAATCCCGTGCTAAAGCTGAATCAGAAAATAAGGCTATCAGGAATCGTAAGCCATACCTTCATGAATCTCGACATCAGCATGCACTGCGAAGAGCAAGAGGATGTGGAGGCCGTATCTATATTGCGAGACCAGTCTCCTGCGAACAGCAGCCTCAGATACTTAGCTATTGCTTCGTCACTGTGCAAATGCAACCCCCTGATATGTATAAGTATAGGAAGATTAGAGATCAAGTGAAGCCATCATAA 843 0.4484 MTHHFGSREYLLFHFQLRLLSHLTPHHFLLLFPSSRNSISFILLLLPPHLQFTHFPFLQGLDFGHGFACKSGNMTSTQDVTDNEAGEKEQSESQMQSLSENGISDPGAGMQNNQYVTPPPLGTGYAMAPLPYPYPDPYCRNIFAPNDAQPYPPQPYGGHPMAHLQLMGIQQAGVPLPSNAIEEPVFVNAKQYHGILRRRQSRAKAESENKAIRNRKPYLHESRHQHALRRARGCGGRIYIARPVSCEQQPQILSYCFVTVQMQPPDMYKYRKIRDQVKPS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60660g00011 280 ProSiteProfiles NF-YA/HAP2 family profile. 181 241 IPR001289 GO:0003700|GO:0006355
Stsc60660g00011 280 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 74 237 IPR001289 GO:0003700|GO:0006355
Stsc60660g00011 280 SMART cbf3 180 241 IPR001289 GO:0003700|GO:0006355
Stsc60660g00011 280 ProSitePatterns NF-YA/HAP2 subunit signature. 186 206 IPR018362 GO:0003677|GO:0016602
Stsc60660g00011 280 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 183 237 IPR001289 GO:0003700|GO:0006355
Stsc60660g00011 280 Gene3D - 181 240 - -
Stsc60660g00011 280 MobiDBLite consensus disorder prediction 90 116 - -
Stsc60660g00011 280 MobiDBLite consensus disorder prediction 77 116 - -
Stsc60660g00011 280 PRINTS CCAAT-binding transcription factor subunit B signature 184 206 IPR001289 GO:0003700|GO:0006355
Stsc60660g00011 280 PRINTS CCAAT-binding transcription factor subunit B signature 215 238 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60660g00011 Stsc-Chr60660 44220 47853 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60660g00011 122 242 CCAAT-HAP2 Transcription Factor Family AT1G30500 71.074 1.35e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Stsc60660g00011 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60660g00011 K08064 - gmx:100809036 261.922