Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60658g00002 ATGAAACTCAAAACTCTCCTCTTCTTCTTATTCTTCTCTCTCTTTCTTCTCATTGCAACCTCATTTGTTTCTGCAGCCACTCTACAACAACAGGAAGTGCAAGTTCTGAAGGAGATAGGGAAGAGACTTGGGAAGACAGATTGGGACTTCACCATAGATCCATGCAGTGGACAAGGAAACTGGGCTTCCCCTACTGCTTCTAAATCTTACTCTGCAATAAATGCTGTAACTTGTGATTGTTCTTTCTCTCATAACAATCTCTGCCATGTTGTTAGCATAGTTCTAAAATCACAAAACCTTTCTGGCACTCTTCCTCCTGAGTTTGCAAACTTGCCTTACCTGCAAGAAATTGATCTCACTCTCAACTACCTTAATGGCACAATCCCAAAGCAATGGAGTTCCTTGAATCTTGTCAACATTTCCCTTTATGGAAATCGAATATCGGGTCAAATTCCAAAGGAGCTGGGAAACATTACCACCCTGAAAAGTTTGGTCTTGGAGTTCAATCAACTCTCCGGAGAGCTTCCTCCTGAGCTTGGGAATCTTTTGCGGCTTGAAAGATTGCATCTTACCTCGAACTTTTTTACTGGGAATTTACCTGCTACTTTTGCTAGGCTCAGTAAATTGAATTACATTCGGCTTGGCGATAATCAATTTTCCGGAGCAATACCGAATTTTATTCAGAGCTGGACAAGTCTTCAGAGAATGGTGATGCATGGGAGTGGTATGAGTGGACCAATTCCCTCTGGAATTAGATTTCTGAAAAACCTTACTGACTTGAGAATCAGTGACTTGAAAGGACCAGATTCTTATTTTCCACCACTTAGTAACCTGACAAATTTGCAAACACTGGTACTGAGAAGTTGCAATCTTATAGGACCGGTTCCTGAATATCTCGGAAATGTAACTACTTTAAGATCATTAGACCTCAGTTTTAACAAATTAAGTGGAGTTATCCCAAACTCATTCGGCGGCCTAATGGACATGAATATACTGTACTTAACTGAAAACTTTTTCACTGGACCACTGCCCAATTGGTATGCTAATCCAGATTACACGGATCTTTCGTATAACAACTTCAGCATCGAAAAGCCAGAACAGTTGACATGTCAACAAGGAAGTGTAAACTTATTTGCATCAGCTTTGAAGGGAAATAACTTGGGAACTTATCCATGTTTGGGAATCACCAACTGTCCTAAACCTTCATACTCTCTCCATATAAATTGTGGTGGGAAGCTCATAACTTATAATGGAAACATCACATATGATGAAGATTCACAAGAAGCCGGGCCAGCAAGATCTCTTCGTAGTGGATCAAACTGGGCAGTTAGCAACACTGGTCACTTCTTTGATAGTGGTGTTGTGGACTATTATACATGGTCTAACTCTAACATATCTAAGCTTGCTGTGAACAATGCCGAACTGTACACGGATGCACGCGTTTCGGCGCTTTCTCTGACATATTATGCATTCTGCATGGGATATGGAAGCTACACTGTGAATCTCCATTTTGCAGAGATAATGTTTACTGATGATCAAACATATAGTAGCCTCGGAAGGCGAGTATTCGACATATATATTCAGAGGAAGTTGTTGCTGAAGGATTTTGATATTGCAAAAGAAGCAGGAGGAGTTGGTAAGGCAATCATAAAGAATTTTACTGCAAATGTGACCGGTGGAACCTTGGAGATTCGATTACGATGGGCCGGGAAAGGGACAACTGCTATTCCATTTGGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTCAATCCAAACTTTACACCCCCGTTGGAAAAAGAAAGTAACGAAAAAGGAAGTGGCATACCGGTGGGGGCTATCATCGGAATTGTATTGGCTGGAGCATTTGTTATTATCATGGTATTTGGTATAGCTTGGTGGAAAGGATGTTTTGGACAAAAAGGTTCATTACATAGAGAGCTACAGGGTTTGGATCTAAAAACCGGCATATTTACCTTAAGGCAAATCAAAGCAGCAACAAACAACTTTGATTTTGCCTGTAAGATTGGAGAAGGAGGGTTTGGTCCAGTATATAAGGGTATTCTTCCAGATGGGACAGTAATAGCAGTTAAACAGCTTTCTTCTCGATCAAGGCAAGGGAATCGCGAGTTCACAAACGAGATTGGCATGATTTCTGCTTTGCAACACCCATGTCTGGTCAAGCTCTATGGCTGCTGTATGGAGGGAGATCAATTGCTGTTGATATATGAATATATGGAAAACAATAGCCTTGCAAGTGCTTTGTTTGCCAAAGAGAAAACTCAGTTGAAATTGGACTGGTCAACACGGCGCAAGATCTGCATAGGCATTGCTAAAGGCTTGGCTTACCTCCATGGAGAGTCCAGATTAAAAATAGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTGGATAAAGATCTGAACCCAAAGATATCTGATTTCGGTTTGGCCAAGCTTGATGATGAGGGTCAAACACACATAAGCACTAGAGTAGCAGGCACTTACGGATATATGGCACCTGAATATGCAATGCATGGTTATTTAACGGACAAAGCAGACGTGTATAGTTTCGGAGTTGTTGCCTTGGAAATAGTGAGTGGCAAAAGCAATGCCATGAGCTGGCAAAGGGAAGAATGCTTCTCTCTTCTTGATTGGGCTCTTCTCTTGAAAGAGAAAGGTGATCTAATGGACCTAGTTGATGAGAGGTTGGGTTCACACTTAAAAAAAGATGAAGCAATGCTCATCATCAGTGTGGCTCTTCTCTGCACAAATGCCTCTCCATTGCACAGGCCAACCATGTCTTCGGTCGTAAGCATGCTCGAAGGCAAAACCTCTGTACAAGAAGTGGTGCCGGACACGACGCAGGTATTCAGCGAGAACAAGTTAGAAATGATCAGAGACTATTACCAACAACAGAAGAAGGGGAAAGATAAGATTCCCGACACTGAAGAAGTGAGCACCTCAACAAATGAAACTGCTGCATTTGTGACTAATTCAGATGTCAATTCAATCAACATGGATTCTTCTTATTGGGAAAAAAGTGGTAGATGA 3057 0.4145 MKLKTLLFFLFFSLFLLIATSFVSAATLQQQEVQVLKEIGKRLGKTDWDFTIDPCSGQGNWASPTASKSYSAINAVTCDCSFSHNNLCHVVSIVLKSQNLSGTLPPEFANLPYLQEIDLTLNYLNGTIPKQWSSLNLVNISLYGNRISGQIPKELGNITTLKSLVLEFNQLSGELPPELGNLLRLERLHLTSNFFTGNLPATFARLSKLNYIRLGDNQFSGAIPNFIQSWTSLQRMVMHGSGMSGPIPSGIRFLKNLTDLRISDLKGPDSYFPPLSNLTNLQTLVLRSCNLIGPVPEYLGNVTTLRSLDLSFNKLSGVIPNSFGGLMDMNILYLTENFFTGPLPNWYANPDYTDLSYNNFSIEKPEQLTCQQGSVNLFASALKGNNLGTYPCLGITNCPKPSYSLHINCGGKLITYNGNITYDEDSQEAGPARSLRSGSNWAVSNTGHFFDSGVVDYYTWSNSNISKLAVNNAELYTDARVSALSLTYYAFCMGYGSYTVNLHFAEIMFTDDQTYSSLGRRVFDIYIQRKLLLKDFDIAKEAGGVGKAIIKNFTANVTGGTLEIRLRWAGKGTTAIPFGSVYGPLISAISVNPNFTPPLEKESNEKGSGIPVGAIIGIVLAGAFVIIMVFGIAWWKGCFGQKGSLHRELQGLDLKTGIFTLRQIKAATNNFDFACKIGEGGFGPVYKGILPDGTVIAVKQLSSRSRQGNREFTNEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLASALFAKEKTQLKLDWSTRRKICIGIAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDDEGQTHISTRVAGTYGYMAPEYAMHGYLTDKADVYSFGVVALEIVSGKSNAMSWQREECFSLLDWALLLKEKGDLMDLVDERLGSHLKKDEAMLIISVALLCTNASPLHRPTMSSVVSMLEGKTSVQEVVPDTTQVFSENKLEMIRDYYQQQKKGKDKIPDTEEVSTSTNETAAFVTNSDVNSINMDSSYWEKSGR 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60658g00002 1018 Pfam Protein tyrosine and serine/threonine kinase 673 942 IPR001245 GO:0004672|GO:0006468
Stsc60658g00002 1018 Gene3D Phosphorylase Kinase; domain 1 641 746 - -
Stsc60658g00002 1018 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 29 266 - -
Stsc60658g00002 1018 Gene3D Transferase(Phosphotransferase) domain 1 747 958 - -
Stsc60658g00002 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 402 594 - -
Stsc60658g00002 1018 ProSiteProfiles Protein kinase domain profile. 671 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60658g00002 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Stsc60658g00002 1018 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 746 - -
Stsc60658g00002 1018 Pfam Malectin domain 404 589 IPR021720 -
Stsc60658g00002 1018 SUPERFAMILY Protein kinase-like (PK-like) 657 943 IPR011009 -
Stsc60658g00002 1018 Gene3D - 401 594 - -
Stsc60658g00002 1018 SMART serkin_6 671 942 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60658g00002 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 970 - -
Stsc60658g00002 1018 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 954 - -
Stsc60658g00002 1018 Gene3D Ribonuclease Inhibitor 29 267 IPR032675 -
Stsc60658g00002 1018 Pfam Leucine Rich Repeat 305 326 IPR001611 GO:0005515
Stsc60658g00002 1018 CDD STKc_IRAK 677 944 - -
Stsc60658g00002 1018 Gene3D Ribonuclease Inhibitor 268 387 IPR032675 -
Stsc60658g00002 1018 SUPERFAMILY L domain-like 85 361 - -
Stsc60658g00002 1018 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60658g00002 Stsc-Chr60658 18188 25576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60658g00002 22 972 Receptor kinase-like Gene Family AT1G53420 53.438 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60658g00002 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60658g00002 - - gmx:100786496 1479.54