Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60658g00001 ATGAATTTCCTCCATCCTCTTTTCTACTTTTGGCTTCTTGCTTCCTGTTGCTTCGCTTCTTTGGCTTGTGGAGCTACTCTCTTTGAAGATGAAGTGGAAGTGATGAAAGAGATAGGAAAGAAGCTTGGGAAGAAAGACTGGAACTTCAGTGTGGATCCATGCAGTGGAGAAGGGAACTGGAAATCATCAAACAAAGAGACAAGAATGATCAATGTGGTGACATGTGATTGCTCTTTTTCCAGTGCCAACGGCAACGCCACTGAAACTGTCTGCCATGTTGTCAGCATTGTTCTGAAGTCACAGAATCTTACGGGCACACTCCCAATTGAACTAGTGAACTTGCCTTACCTCCAAGAAATTGACCTCACCCGTAACTACCTTAACGGCACGATTCCACCACAATGGGGCTCCATGAAACTTGTCAACATTTCCCTACTTGGAAATCGAATAACGGGTCAAATTCCAAAGGAGCTGGGAAACATAACCACCCTGAAAAGCTTGGTTTTGGAGTTCAATCAACTCTCCGGAGAGATTCCACCTGAGCTTGGGAATCTTTACCAGCTTGAAAGACTGATTCTTACTTCCAACTATTTTACTGGGAATTTACCTGCTACATTTGCTAAGCTCACTAAATTGAATCACATTCGACTAGGCGATAATCAATTTTCTGGAACTCTACCAAATTTTATTCAGAGCTGGACAAGTCTTAAGAGACTGGTGATGCAAGGGAGTGGTATGAGTGGACCAATTCCTTCTGGAATTTCATTTCTGAAGAACCTCACTGACTTGAGAATCACAGACTTGAAAGGACCAGATTCTTATTTTCCACCACTTATTAACTTGACAAATCTGGAAACTCTAGTACTGAGGAGTTGTAATCTTATAGGATCAGTACCTGATTATCTAGGAAATGTATCTACACTAAAATCACTAGACCTCAGTTTTAACAAATTAAGTGGAACCATTCCAAGCTCCTTGGGTGTCTTACAGGACATGAACATACTGTACTTGACTGGAAACCTTTTCACTGGACCATTGCCCAATTGGATAGCTAACCCGGACTACACAGATCTTTCATATAACAACTTCAGCATCGAAAAGCCAGAGCAGTTGACTTGTCAACAAGGAAGCGTGAATCTGTTTGCATCATCTATGAAGGGAAATAACTCGGGAGTTGTTCCATGTTTGGGAAACATTAGCTGCCCTAAAACTTCATACTCTCTCCATATAAATTGCGGCGGGAAGCAAGTAACTTCTAATGGAAACAATACGTACGATGGAGATACACAAGAAGCTGGACCAGCAAGATCTTTACGTGCCGGATCAAACTGGGCAGTTAGCAACACTGGTCACTTCTTTGATAGTGGCCTTGTGGACTATTATACATGGTCTAATACATCTAAGCTTACCATGAACAATGCCGAACTGTACACGGATGCACGTGTTTCTGCACTTTCTCTGACTTATTATGGATTTTGCATGGGAAATGGAAGCTACACTGTAAACCTCCATTTTGCAGAGATAATGTTTACAGATGATCAGACATATGGCAGCCTCGGAAGGCGTGTATTTGACGTCTATATTCAGAGGAAGTTGGTGCTAAAAGATTTTGATATTGCAAAAGAAGCAGGAGGAGTTCGTAAGCCAATCATTAAGAAATTTACTGCTAATGTGACCAGTGGCACCTTGGAGATTCGCTTACATTGGGCTGGGAAAGGGACAACAGCTATTCCATTTGGATCAGTATATGGTCCTCTAATATCAGCTATATCTATAAATCCTGACTTTACACCACCAGTGGAAAAAGTAACTGACAAAAGTGGAAGTGGCATACCTGTGGGGGCTGTCACTGGAATTGTATTGGCTGGAGCACTTGTTATTATCATGGTATTTGGTATAGCTTGGTGGACAGGATGTTTAGGACAAAAAGGTTCATTACATAGAGAGCTACAGGGTATGGATCTAAAAACCAGCATATTTACCTTGAGGCAAATCAAAGCAGCAACTAACAATTTTGATGTTGCTTGTAAGATTGGAGAAGGAGGGTTTGGTTCTGTTTACAAGGGAGTTCTTTCAGATGGCACAGTAGTGGCAGTTAAACAGCTTTCTTCTAAATCGAAGCAAGGGAATCGCGAGTTCATAAACGAGATTGGCATGATTTCTGCTTTGCAGCACCCATGTCTAGTTAAGCTCTATGGCTGCTGTATGGAGGGAGATCAATTGTTGTTGATATATGAATATATGGAAAACAATAGCCTCGCTCGCGCTTTGTTTGCCCAAGAAAAAAGTCAACTGAAATTGGATTGGTCGACAAGGCTTAAGATTTGCATTGGCGTCGCTAAAGGCTTGGCTTACCTCCATGGAGAGTCAAGGTTAAAGATTGTTCATAGAGATATTAAGGCCACCAATGTACTGCTGGATAAAGATCTAAACCCAAAGATATCTGATTTCGGTTTGGCCAAGCTTGATGAAGATGGACTTACCCACATAACTACTAGAGTGGCTGGCACCTACGGATACATGGCTCCTGAATATGCAATGCATGGTTATTTGACAGACAAAGCAGATGTTTATAGCTTTGGAATTGTTGCCTTGGAAGTAGTTAGTGGCAAAAGCAACAACATGAACTGGCAAAAGGAAGAATGTTTTTCTCTTCTTGATTGGGCTCTTCTCTTGAAAGAAAAAGGTGATCTGTTGGACCTAGTTGATGAGAGATTGGGTTCACACTTCAAAAAAGATGAAGCAATGCTCATCATCAATGTGGCTCTTCTATGTGCAAATTATTCTCCGCTGCACAGGCCCACCATGGCTTCAGTGGTAAGCATGCTCGAAGGCAAAAGCGCCGTTCAAGAGGCCATGCCGGACACAACCCAGATATTCGACGAGAGGAAGTTAGAAATGATTAGAACCTGTTACCAACTGAGGGGAAAAAATAACTTTCCAGACACTGATGAACATAGCACCTCAATAGTTGAAACTGCTGCTTTTGTGACTAATAATTCAGAGGTGCATTCAATCAACATGGATTCTTCTTACTGGGAGAAAAGTAGTACAAGATGA 3060 0.417 MNFLHPLFYFWLLASCCFASLACGATLFEDEVEVMKEIGKKLGKKDWNFSVDPCSGEGNWKSSNKETRMINVVTCDCSFSSANGNATETVCHVVSIVLKSQNLTGTLPIELVNLPYLQEIDLTRNYLNGTIPPQWGSMKLVNISLLGNRITGQIPKELGNITTLKSLVLEFNQLSGEIPPELGNLYQLERLILTSNYFTGNLPATFAKLTKLNHIRLGDNQFSGTLPNFIQSWTSLKRLVMQGSGMSGPIPSGISFLKNLTDLRITDLKGPDSYFPPLINLTNLETLVLRSCNLIGSVPDYLGNVSTLKSLDLSFNKLSGTIPSSLGVLQDMNILYLTGNLFTGPLPNWIANPDYTDLSYNNFSIEKPEQLTCQQGSVNLFASSMKGNNSGVVPCLGNISCPKTSYSLHINCGGKQVTSNGNNTYDGDTQEAGPARSLRAGSNWAVSNTGHFFDSGLVDYYTWSNTSKLTMNNAELYTDARVSALSLTYYGFCMGNGSYTVNLHFAEIMFTDDQTYGSLGRRVFDVYIQRKLVLKDFDIAKEAGGVRKPIIKKFTANVTSGTLEIRLHWAGKGTTAIPFGSVYGPLISAISINPDFTPPVEKVTDKSGSGIPVGAVTGIVLAGALVIIMVFGIAWWTGCLGQKGSLHRELQGMDLKTSIFTLRQIKAATNNFDVACKIGEGGFGSVYKGVLSDGTVVAVKQLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCMEGDQLLLIYEYMENNSLARALFAQEKSQLKLDWSTRLKICIGVAKGLAYLHGESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEDGLTHITTRVAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEVVSGKSNNMNWQKEECFSLLDWALLLKEKGDLLDLVDERLGSHFKKDEAMLIINVALLCANYSPLHRPTMASVVSMLEGKSAVQEAMPDTTQIFDERKLEMIRTCYQLRGKNNFPDTDEHSTSIVETAAFVTNNSEVHSINMDSSYWEKSSTR 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60658g00001 1019 Gene3D Phosphorylase Kinase; domain 1 642 747 - -
Stsc60658g00001 1019 ProSiteProfiles Protein kinase domain profile. 672 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60658g00001 1019 Pfam Leucine Rich Repeat 308 329 IPR001611 GO:0005515
Stsc60658g00001 1019 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 405 595 - -
Stsc60658g00001 1019 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 955 - -
Stsc60658g00001 1019 Gene3D Ribonuclease Inhibitor 270 397 IPR032675 -
Stsc60658g00001 1019 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 276 371 - -
Stsc60658g00001 1019 Pfam Malectin domain 407 590 IPR021720 -
Stsc60658g00001 1019 SUPERFAMILY L domain-like 88 364 - -
Stsc60658g00001 1019 Gene3D Ribonuclease Inhibitor 40 196 IPR032675 -
Stsc60658g00001 1019 CDD STKc_IRAK 678 945 - -
Stsc60658g00001 1019 ProSitePatterns Protein kinases ATP-binding region signature. 678 700 IPR017441 GO:0005524
Stsc60658g00001 1019 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53420 28 269 - -
Stsc60658g00001 1019 SUPERFAMILY Protein kinase-like (PK-like) 656 944 IPR011009 -
Stsc60658g00001 1019 Gene3D Transferase(Phosphotransferase) domain 1 748 959 - -
Stsc60658g00001 1019 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 747 - -
Stsc60658g00001 1019 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 955 - -
Stsc60658g00001 1019 Pfam Protein tyrosine and serine/threonine kinase 676 942 IPR001245 GO:0004672|GO:0006468
Stsc60658g00001 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Stsc60658g00001 1019 Gene3D Ribonuclease Inhibitor 197 269 IPR032675 -
Stsc60658g00001 1019 Gene3D - 403 595 - -
Stsc60658g00001 1019 SMART serkin_6 672 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60658g00001 Stsc-Chr60658 1357 11416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60658g00001 21 977 Receptor kinase-like Gene Family AT1G53420 53.782 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc60658g00001 PK_Tyr_Ser-Thr 7.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60658g00001 - - gmx:100786496 1540.01