Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60655g00004 ATGAAGAGTGATGAAGTGGAAGTTGATGCAGGTTTTGAAACCATGGATGATGATGAAGTTAACAACAACACTAATAACAATAACAATAAGAATAAGAACACAGAAGATATGAGTGAAGTGAATTACGAGTGGCTTCATCATTCCATTGATGATGATCCAAACTTGTTCTACGATGATTTCCCTCCTCTCCCTGATTTCCCATGCATCTCATCACCACCATCATCCTCATCATCAACATCTTCAACATCAAAGCCAGCAGAGAAACAAAAACCCATCACTGCTACTACTGCATGTTCTTCATCTTCTTCATCATCATCATCATGTGCTGTTCTCAAAAAGCACATGCAGAAAGCAGAAGCAGCACCTTTGTGTTCCACTGCTTCCATGGAGATCTCAGAAGCCATGGATACCCCATTTGGTGGTGTTGGTGATTGCATGGATATGATTGACATGGAAATGGAGCCTTTTGGGTTCATAGACATGTTAGAAGAGCAAAACAATGCTGATTTCTTTCACCCGGATTCCATTTTCCAATACAACAACAACCTTCTTCAAACTGAAAATGCAAATGCAAATGCAAATGAAATTGAAATCCCATCATTACAACAACAACCAGCAGTAGAGGCAGAGGAAGAAGGTGTTACCAACAACAACAGAGAGGAGGGTGAAATTGTAATTCAGCATAACCATGATGATGAAATGAGCAATGTGTTCTTGGAATGGCTAAAGTCAAACAAGGACAAGATCTCAGCGAGTGATTTGAGGAATGTGAAGCTCAAGAAATCAACGATTGAATCCGCAACGAAGCGATTGGGAGGAGGAAAACAAGGGATGAAGAGTTTGCTAAAGCTTATTCTTGAATGGGTTCAAAGGAGCCACCTCAAGAACAAGAACACACCAATTGGATTTGGGTTTGAACCTCCTCAATCTTCATCAAACCCTAATTGCTTCAATAAACCCCAATTATCACCACCACCACCACCACCACCACAACCACCATGCATTTATGCCTCTCAGCCTTCTTCAATGGTGCAGTATCTTCCACAGCTTGCAGAGAATAATCCATGGCCTAATTCTCAGTTAAATGTTGCTTCCCATTATAACCAACCATTTGGGGACAATCATTTTCGCCCTGCTGTTCTTTATGGGAATCAGTATCCTTATCAGATGTTGTATGGAAATGGTAATTGTGGTGGTGGTGGTGATCATGGGTGGCGGAGATTAGGCCCTTTGGCTACGAAAGAAGCGAGGAAGAAGAGGATGGCGAGGCAGAGAAAGTGTTCTTCATCACACCAGAGGCAAAGCAATCACTCTGCCCAGCCACAGAATCAGAGCCAAGTTGCTGATCCGGTGACCGGGGCTGAAAATTGGCTGTATTGGCAGGGTGCAGCTGGCGGTGCAGCTTCAATGGCGCCGGGTGCTCCGGCTGAGGTTCAGCCGGCCGCACTAGGCCAGAATTATTGTCATCAGAGTCGTGGATTATCAGATAAGCGATCACAGGGGTTGAAGTCATCAGAGAAGAACTTGAAATTTCTTCTCCAAAAGGTTTTGAAGCAAAGCGATGTTGGTAGCTTGGGAAGAATAGTCTTGCCGAAAAAAGAGGCAGAAACTCATTTGCCAGAATTAGATGCAAGAGATGGAATTTCTATTGACATGGAAGACATTGGAACTTCTCACGTGTGGAATATGCGTTACAGCATCAGATACTGGCCAAACAATAAAAGCAGGATGTATCTGCTTGAGAACACTGGAGACTTTGTGAGAGCCAATGGACTCCAAGAAGGAGACTTTATAGTCATATATTCAGATGCAAAGTGTGGCAAATTTATGATAAGAGGCGTGAAAGTGAGGCAAGCAGGGACGCCATCAGAGACCAAGAAAGCAGCAGGAAAATCGCAGAAAAACCAGCATACAGCTGTTAATGTTAATGGTCCTCACAATAATGCTACTTCGTCTTCACCTCATCAGATCAAAATGGAAAATTAA 1986 0.4305 MKSDEVEVDAGFETMDDDEVNNNTNNNNNKNKNTEDMSEVNYEWLHHSIDDDPNLFYDDFPPLPDFPCISSPPSSSSSTSSTSKPAEKQKPITATTACSSSSSSSSSCAVLKKHMQKAEAAPLCSTASMEISEAMDTPFGGVGDCMDMIDMEMEPFGFIDMLEEQNNADFFHPDSIFQYNNNLLQTENANANANEIEIPSLQQQPAVEAEEEGVTNNNREEGEIVIQHNHDDEMSNVFLEWLKSNKDKISASDLRNVKLKKSTIESATKRLGGGKQGMKSLLKLILEWVQRSHLKNKNTPIGFGFEPPQSSSNPNCFNKPQLSPPPPPPPQPPCIYASQPSSMVQYLPQLAENNPWPNSQLNVASHYNQPFGDNHFRPAVLYGNQYPYQMLYGNGNCGGGGDHGWRRLGPLATKEARKKRMARQRKCSSSHQRQSNHSAQPQNQSQVADPVTGAENWLYWQGAAGGAASMAPGAPAEVQPAALGQNYCHQSRGLSDKRSQGLKSSEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIDMEDIGTSHVWNMRYSIRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDAKCGKFMIRGVKVRQAGTPSETKKAAGKSQKNQHTAVNVNGPHNNATSSSPHQIKMEN 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 67 104 - -
Stsc60655g00004 661 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 227 645 IPR044800 GO:0003700
Stsc60655g00004 661 ProSiteProfiles B3 DNA-binding domain profile. 513 617 IPR003340 GO:0003677
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 70 104 - -
Stsc60655g00004 661 CDD BfiI_C_EcoRII_N_B3 511 614 - -
Stsc60655g00004 661 FunFam B3 domain-containing transcription factor FUS3 509 626 - -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 17 35 - -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 618 661 - -
Stsc60655g00004 661 SUPERFAMILY DNA-binding pseudobarrel domain 512 610 IPR015300 -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 415 448 - -
Stsc60655g00004 661 SMART B3_2 513 615 IPR003340 GO:0003677
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 300 318 - -
Stsc60655g00004 661 Pfam B3 DNA binding domain 514 612 IPR003340 GO:0003677
Stsc60655g00004 661 Gene3D - 503 623 IPR015300 -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 625 661 - -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 428 448 - -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 1 35 - -
Stsc60655g00004 661 MobiDBLite consensus disorder prediction 300 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60655g00004 Stsc-Chr60655 25233 28475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60655g00004 4 654 B3 DNA Binding Superfamily AT3G24650 39.816 1.81e-118 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc60655g00004 B3 3.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60655g00004 K09287 - gmx:100795226 493.812