Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60655g00003 ATGCAACAAAGAGTAAAAAGTGAGGACTCAGAGAGCATCTTGAGTAGCAAGAACATTGCATTGGATGAGCAGACTTTGGAGGAGGAGTTGCGGAATGCCATTGCTGAAGAGAACTACTATGCTAAAGCAACAAAAATAAGGGATACTCTCAAAAACCTCCAAAAAGATAGCAAGACAACAATATTTGGCAAATCAGCTCTAGCTTTGCTTTCATGGCTCAAAACCGCTTCCTCCAAAACCCCCTCACCTCTCTCAGACTGGAACCTTCTAGACCCTACACCATGCAACTGGTCCTGCGTCAAATGCTCCCTAGACAACCACGTCATCGAGCTCAACATCCAAGCAATACAGTTAGCCCTTCCTTTCCCATCAAACCTCTCTTCATCCCTTCCTTTCCTTCGAAAACTCGTCATCTCCGACGCCAATCTCACCGGTCCGATCCCCCGGGATATCGGACACTTCGTTTCACTTACCGTCCTTGATCTCAGCTCAAATTCTCTTGTTGGTTCCATTCCTTCCACCATTGGAAACCTCAAGAACCTCCAAGACTTGAGCTTAAACTCAAACCAGCTCACAGGTCCAATCCCCAAGGAGATTGGCAGCTGTGTTAGCCTCAAGAATCTCAATCTTTTTGACAATAGCCTCAGCGGCGAGCTTCCGGTCGAGCTCGGAAGCCTTTGGAATCTCGAAATGATAAGATGTGGAGGGAACAAGGACATTGTAGGGAAGATTCCGGAATCTCTTGGTAACTGCAAGAATCTAACCGTTTTAGGCCTTGCAGATACCAAGGTTTCGGGTTCGTTACCTTCTTCCTTGGGAAAACTCACCCTGCTTCAGACTATCTCAATCTATAGCACTATGCTTTCCGGTGAGATTCCGGCTGAGATTGGAAACTGTTCTGAGCTGGTGAACTTGTTTCTTTACGAGAACGATCTCTCCGGTTCGATTCCAAGGGAGTTAGGGAAGCTGCAGAAGCTTGAAAAGATGCTGCTATGGCAGAACAGTTTCGTTGGAAGCATACCTCAAGAGATTGGAAGCTGCAAAAGCTTGAAGATTCTTGATGTCTCCTTGAACTCTCTGTCAGGAACAATACCGAGAAGCTTAGGGAATCTTTCGAATCTCGAAGAGCTTATGCTGAGTAACAACAACATTTCAGGTTCAATTCCTGAAGTTCTTTCAAACCTGACGAACCTTGTTCAGTTGCAATTAGATACAAATGAGATTTTGGGTTCAATTCCACCGGAGATTGGAAAACTGGAGAATCTTGAAGTCTTCTTTGCATGGCAGAACAAGCTCGAAGGAGCGATTCCTTCGACGCTAGGCGGTTGTAGAAGCCTTCAAGCTTTGGATTTATCTTACAACTCACTCACCGGTGGATTACCTCCGAGTTTGTTTCAGCTTCAGAACTTAACAAAGCTTCTCCTTATCTCGAACCAAATCTCCGGCCTAATCCCGCCGGAGATCGGTAACTGCAGCTCCCTCATCCGCCTCCGCCTCGTTCAGAACAGAATCACAGGCCAGATTCCAAGTGAAATTGGATTCCTTAACAACCTCAGCTTCCTTGATCTATCTGAAAATCATCTCACAGGGCTGGTACCAGAGAATATTGGTAACTGCAAGGAGCTTCAAATGCTGAACCTAAGCAATAACTCTCTTTCCGGCGCTTTGCCGAGCTCTTTATCTTCTCTTACAAGGCTTGAAGTCTTGGATGTCTCAATGAACAACTTCTCCGGCGAGTTTCCGATGAACATCGGCGAGCTGGCTTCTCTGCTTAGAATCATTGTTAGGCAAAATATTCTCTCTGGAGCGATACCTTCTTCGATTGGAAGGTGTTCTGGTCTTCAGCTTTTAGACCTCAGCAGCAACAGATTCTCAGGAAGCATACCAGAAGAACTATTCGAAATTGAAGCTCTAGACATTGCTCTTAACTTGAGTCACAATGCATTTTCTGGAATAGTTCCTCCACAGATTTCAGCTTTGAACAAGTTGTCTATTTTGGACATTTCTCATAATTTGCTTGAAGGTGACCTGTTAGCATTTTCAGGGCTTCAAAATCTTGTTTCCTTGAATATCTCATACAATAAATTCTCCGGTTATTTACCGGACAGCAAGCTATTCCGCCAGTTATCGCCGACAGATTTCGAAGGGAATCAAGGTTTGTGTCCCAATGGCCATGATTCTTGTTTCATAAGCAATGCTGCAATGACTTCAATGATGCATAGTACTAATTCCAAGAGGTCTCAAATAATCAAACTCGCAATCGGACTTCTAAGCGCATTGATAGTTGCATTAGCAATCTTTGGAATTGCTACGATCATTCGAGCAAGGAAAGTTGCTCAAGATGGAAATGATTCTGAAATTGGAGAGAACTCATGGCCATGGCACTTCACACCATTTCAGAAGCTCAATTTCTCGGTTGATCAAGTATTGAAGTGTTTGGTGGAGTCTAACATAATTGGAAAGGGATGTTCTGGAGTTGTTTACAAGGCTGAAATAGGAAACGGCGATGTGATCGCCGTGAAGAAGCTCTGGCCAACAACATTGGCTTCAAGATATGACTGCCGGAGCAGTGACAAGCCGGTGAGTAACTATGGAGTTCGTGATTCCTTCTCGGCTGAGGTGAAGACACTCGGCTCGATTCGCCACAAGAACATAGTGAGGTTCTTGGGCTGCTGCTGGAACAGAAACACAAGGCTGCTCATGTATGACTATATGCCTAATGGAAGCCTTGGAAATCTGCTCCATGAAAGGAGTAACTGCTTGGAATGGGATATCAGATACCGGATTATACTCGGCGCGGCGCAAGGACTGGCCTACTTGCATCATGATTGTGTTCCTCCCATTGTTCATAGGGACATCAAGGCCAATAATATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGACTCGCCAAACTCGTGGATGATGGCGATTTCGCACGATCTTCTAGCACATTGGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGCTACATGATGAAAATAACAGAGAAAAGTGATGTGTACAGCTATGGTGTTGTTGTACTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCAGAAGGAGTCCACATTGTTGATTGGGTGAGACAAAAGAGAGGAGGAACCGATGTCCTCGACGAGAGCCTCCGCGCCCGGCCGGAACCTGAAATCGAGGAGATTCTGCAGACATTAGGTGTGGCTTTCTTGTGTGTTAATCCAAGCCCTGATGACAGGCCAAACATGAAAGATGTAGCAGCAATGCTTAAAGAAATTAGGCAAGAAAGAGAAGAGTATATGAAAGTTGACATGATTCTGAATGGATCTTCAGGAAATGATCAACAAGGAAGTAGTAATCAAAATCATTCACACTCATACCCAATTAGTAGCAGCAGCAACACAAATTTTTCTGCATCTATGTTTATTTCTCCATCAGCATCCAATAGTAAAGTTACTTTCAAATAG 3486 0.4438 MQQRVKSEDSESILSSKNIALDEQTLEEELRNAIAEENYYAKATKIRDTLKNLQKDSKTTIFGKSALALLSWLKTASSKTPSPLSDWNLLDPTPCNWSCVKCSLDNHVIELNIQAIQLALPFPSNLSSSLPFLRKLVISDANLTGPIPRDIGHFVSLTVLDLSSNSLVGSIPSTIGNLKNLQDLSLNSNQLTGPIPKEIGSCVSLKNLNLFDNSLSGELPVELGSLWNLEMIRCGGNKDIVGKIPESLGNCKNLTVLGLADTKVSGSLPSSLGKLTLLQTISIYSTMLSGEIPAEIGNCSELVNLFLYENDLSGSIPRELGKLQKLEKMLLWQNSFVGSIPQEIGSCKSLKILDVSLNSLSGTIPRSLGNLSNLEELMLSNNNISGSIPEVLSNLTNLVQLQLDTNEILGSIPPEIGKLENLEVFFAWQNKLEGAIPSTLGGCRSLQALDLSYNSLTGGLPPSLFQLQNLTKLLLISNQISGLIPPEIGNCSSLIRLRLVQNRITGQIPSEIGFLNNLSFLDLSENHLTGLVPENIGNCKELQMLNLSNNSLSGALPSSLSSLTRLEVLDVSMNNFSGEFPMNIGELASLLRIIVRQNILSGAIPSSIGRCSGLQLLDLSSNRFSGSIPEELFEIEALDIALNLSHNAFSGIVPPQISALNKLSILDISHNLLEGDLLAFSGLQNLVSLNISYNKFSGYLPDSKLFRQLSPTDFEGNQGLCPNGHDSCFISNAAMTSMMHSTNSKRSQIIKLAIGLLSALIVALAIFGIATIIRARKVAQDGNDSEIGENSWPWHFTPFQKLNFSVDQVLKCLVESNIIGKGCSGVVYKAEIGNGDVIAVKKLWPTTLASRYDCRSSDKPVSNYGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGNLLHERSNCLEWDIRYRIILGAAQGLAYLHHDCVPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGVVVLEVLTGKQPIDPTIPEGVHIVDWVRQKRGGTDVLDESLRARPEPEIEEILQTLGVAFLCVNPSPDDRPNMKDVAAMLKEIRQEREEYMKVDMILNGSSGNDQQGSSNQNHSHSYPISSSSNTNFSASMFISPSASNSKVTFK 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60655g00003 1161 Gene3D Ribonuclease Inhibitor 463 735 IPR032675 -
Stsc60655g00003 1161 MobiDBLite consensus disorder prediction 1114 1137 - -
Stsc60655g00003 1161 PRINTS Leucine-rich repeat signature 518 531 - -
Stsc60655g00003 1161 PRINTS Leucine-rich repeat signature 660 673 - -
Stsc60655g00003 1161 MobiDBLite consensus disorder prediction 1113 1137 - -
Stsc60655g00003 1161 Gene3D Ribonuclease Inhibitor 65 218 IPR032675 -
Stsc60655g00003 1161 Gene3D Ribonuclease Inhibitor 219 318 IPR032675 -
Stsc60655g00003 1161 Coils Coil 1089 1109 - -
Stsc60655g00003 1161 ProSitePatterns Protein kinases ATP-binding region signature. 819 842 IPR017441 GO:0005524
Stsc60655g00003 1161 SUPERFAMILY L domain-like 331 554 - -
Stsc60655g00003 1161 FunFam Predicted protein 220 318 - -
Stsc60655g00003 1161 FunFam Nuclear pore complex protein NUP107 63 219 - -
Stsc60655g00003 1161 SMART serkin_6 813 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60655g00003 1161 Gene3D Ribonuclease Inhibitor 319 462 IPR032675 -
Stsc60655g00003 1161 SUPERFAMILY Protein kinase-like (PK-like) 800 1096 IPR011009 -
Stsc60655g00003 1161 SUPERFAMILY L domain-like 497 722 - -
Stsc60655g00003 1161 SMART LRR_typ_2 154 177 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 611 635 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 178 202 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 395 419 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 371 394 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 515 539 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 467 491 IPR003591 -
Stsc60655g00003 1161 SMART LRR_typ_2 683 708 IPR003591 -
Stsc60655g00003 1161 Pfam Protein kinase domain 815 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60655g00003 1161 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 905 1114 - -
Stsc60655g00003 1161 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Stsc60655g00003 1161 Pfam Leucine rich repeat 422 480 IPR001611 GO:0005515
Stsc60655g00003 1161 Pfam Leucine rich repeat 349 408 IPR001611 GO:0005515
Stsc60655g00003 1161 Pfam Leucine rich repeat 517 576 IPR001611 GO:0005515
Stsc60655g00003 1161 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 796 904 - -
Stsc60655g00003 1161 ProSiteProfiles Leucine-rich repeat profile. 373 396 IPR001611 GO:0005515
Stsc60655g00003 1161 ProSitePatterns Serine/Threonine protein kinases active-site signature. 948 960 IPR008271 GO:0004672|GO:0006468
Stsc60655g00003 1161 Gene3D Transferase(Phosphotransferase) domain 1 905 1118 - -
Stsc60655g00003 1161 SUPERFAMILY L domain-like 70 337 - -
Stsc60655g00003 1161 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 319 1098 - -
Stsc60655g00003 1161 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 445 732 - -
Stsc60655g00003 1161 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 319 427 - -
Stsc60655g00003 1161 ProSiteProfiles Protein kinase domain profile. 813 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60655g00003 1161 Gene3D Phosphorylase Kinase; domain 1 798 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60655g00003 Stsc-Chr60655 9413 18253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60655g00003 64 1115 Receptor kinase-like Gene Family AT5G56040 48.405 0.0 974
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Stsc60655g00003 Pkinase 8.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60655g00003 - - gmx:100794698 1612.43