Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60655g00001 ATGGACCACAATCGAATTGACACTTCTACCGACGCCATTGGAGCATCATCACTTCTCACTAAAAACATGTCCACCACCTCTGGTCTTGTTATTCCATGCAAAGCTGCTGTTGCATGGGAAGCAGGGAAGCCTTTGGTGATAGAAAAAGTGGAGGTGGCTCCACCACAGGCCATGGAAGTGAGAATCAAGGTCAAATATACCTCACTCTGCCACACTGATCTCTACTTCTGGGAGGCCAAGGGACAAACTCCACTGTTTCCCCGGATTTTCGGTCACGAGGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGAGTCACAGACCTGCAGGTTGGTGATCATGTGCTTCCAGTATTCACCGGTGAATGCGGCGAATGTGCTCATTGCAAATCCGAGGAAAGCAACATGTGTGACCTCCTGAGAATAGATACAGAGAGAGGAGTCATGCACAGTGATGGAAAAAGCAGGTTTTCGATTAATGGTACGCCGATAAACCACTTTGTTGGCACGTCCACGTTTAGTGAATACACTGTCATACATTCTGGATGCTTGGCAAAGCTCAATCCACTGGCACCAATGGATAAAGTATGTGTCCTCAGTTGTGGCATTTCAACAGGATTAGGAGCAACATTGAATGTAGCAAAACCAAAGAAGGGTTCTACAGTGGCAGTGTTTGGTCTTGGAGCTGTTGGGCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGTGCATCTAGAATTATTGGAATTGATTTGAACCCAAACAGGTTTGAAGAAGCCAAAAAGTTTGGAATAACTGAGTTTGTGAATCCAAAGGACTATGATAGACCTGTTCAACAGGTTATTGCTGAAATGACGAATGGAGGAGTCGACCGAAGCATAGAGTGCACCGGAAACATCAATGCAATGATATCTTCTTTTGAATGTGTTCATGATGGATGGGGTGTTGCTGTGCTTGTTGGAGTTCCAACTAAGGATGCAGTTTTCATGACCAAGCCCATCAATTTTCTGAATGAAAGAACACTAAAAGGAACTTTCTTTGGAAATTACAAGCCCAGGACTGATCTTCCATCTGTGGTTGATATGTATATGAACAAGAAATTGGAATTGGACAAGTTCATAACCCATAGAGTTCCTTTCTCTGATATCAACAAGGCATTTGATCTAATGGTGAAAGGGGAGGGACTAAGGTGCATCATTAGCATGGAAGACTAG 1209 0.445 MDHNRIDTSTDAIGASSLLTKNMSTTSGLVIPCKAAVAWEAGKPLVIEKVEVAPPQAMEVRIKVKYTSLCHTDLYFWEAKGQTPLFPRIFGHEAAGIVESVGEGVTDLQVGDHVLPVFTGECGECAHCKSEESNMCDLLRIDTERGVMHSDGKSRFSINGTPINHFVGTSTFSEYTVIHSGCLAKLNPLAPMDKVCVLSCGISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARIAGASRIIGIDLNPNRFEEAKKFGITEFVNPKDYDRPVQQVIAEMTNGGVDRSIECTGNINAMISSFECVHDGWGVAVLVGVPTKDAVFMTKPINFLNERTLKGTFFGNYKPRTDLPSVVDMYMNKKLELDKFITHRVPFSDINKAFDLMVKGEGLRCIISMED 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60655g00001 402 Gene3D - 205 343 - -
Stsc60655g00001 402 SUPERFAMILY GroES-like 26 208 IPR011032 -
Stsc60655g00001 402 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 191 365 IPR036291 -
Stsc60655g00001 402 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 91 105 IPR002328 GO:0008270|GO:0016491
Stsc60655g00001 402 Pfam Zinc-binding dehydrogenase 228 358 IPR013149 -
Stsc60655g00001 402 FunFam alcohol dehydrogenase 1-like isoform X1 41 204 - -
Stsc60655g00001 402 SUPERFAMILY GroES-like 350 398 IPR011032 -
Stsc60655g00001 402 Pfam Alcohol dehydrogenase GroES-like domain 59 183 IPR013154 -
Stsc60655g00001 402 CDD alcohol_DH_plants 31 398 - -
Stsc60655g00001 402 FunFam Alcohol dehydrogenase class-P 205 343 - -
Stsc60655g00001 402 Gene3D - 41 392 - -
Stsc60655g00001 402 PANTHER ALCOHOL DEHYDROGENASE 30 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60655g00001 Stsc-Chr60655 2665 6177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60655g00001 59 392 Monolignol Biosynthesis Gene Families AT1G72680 23.009 6.42e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60655g00001 K18857 - egr:104426870 690.263