Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60653g00006 ATGCCCGCAGATGAGATCAAACTGGAAGAAGGTATTGGTAATATTGGTAGGGGAACGTCGCAAAGTATTAAAGAAAATGGGTTTTGTGGTTCTCCTGAGGTAGTTCTCCTTATACAGAAGGTAATTGCGGAGACGATTGGGACATACTTCTTAGTATTCTTAGGATGTTGTGTAGTGGTTTTGAATGGTGTAGAAGAGAGTAAAGGTATGATATCATTTCCAGGGATATGTGTGACATGGGGTCTTGCAGTTATGATATTGATCTATGCTCTTGGTCACATTTCTGGTGCACATTTTAATCCAGCTGTCACCGTAAGCTTTGCTATCTATCGCCGTTTCCCTCCTAGACAGGTGCCTCTATATCTGGCTGCGCAAGTGCTAGGGTCAGTGCTTGCAAGTGGAACATTGTACCTGCTATTTGATGTGACAGTGGACTCATACTTCGGAACAGTACCAAAAGGACCATATATTCAGTCTCTTGTATTTGAGATCCTCACTTCCTTTCTATTGATGTTTGTTGTCTCTGCCGTTACCTCCGATGATAGAGCAGTTGGAGAATTGGCGGGAATTGCCGTTGGTATGACAGTTCTAGTAGATGTTTTTGTTGCCGGGCCAGTTTCAGGAGCATCCATGAACCCAGCAAGAAGCTTAGGACCAGCATTGGTGATGCGTATTTACGATGGATTTTGGATTTATATAATTGGACCCTTTTGTGGTGCCATTCTCGGTGCCTCTGCCTACAACTTAATTAGATTCACTGAGAAACCACTCAAAGAAATTGGCCACAACTCTAGTTTCCTCAAAAGCATGTCCAAAGTATCAAGCTTTCGGATGTGA 837 0.4301 MPADEIKLEEGIGNIGRGTSQSIKENGFCGSPEVVLLIQKVIAETIGTYFLVFLGCCVVVLNGVEESKGMISFPGICVTWGLAVMILIYALGHISGAHFNPAVTVSFAIYRRFPPRQVPLYLAAQVLGSVLASGTLYLLFDVTVDSYFGTVPKGPYIQSLVFEILTSFLLMFVVSAVTSDDRAVGELAGIAVGMTVLVDVFVAGPVSGASMNPARSLGPALVMRIYDGFWIYIIGPFCGAILGASAYNLIRFTEKPLKEIGHNSSFLKSMSKVSSFRM 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60653g00006 278 SUPERFAMILY Aquaporin-like 36 259 IPR023271 -
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 193 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 162 180 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 230 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 Pfam Major intrinsic protein 37 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 CDD MIP 39 250 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 NCBIfam MIP family channel protein 43 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60653g00006 278 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Stsc60653g00006 278 PANTHER AQUAPORIN NIP2-1 25 263 IPR034294 -
Stsc60653g00006 278 Gene3D Glycerol uptake facilitator protein. 18 264 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60653g00006 Stsc-Chr60653 38412 40601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60653g00006 3 271 Major Intrinsic Protein MIP AT5G37810 61.397 2.26e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60653g00006 K09874 - gmx:100819179 362.459