Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60650g00013 ATGTCTGATAATTCCAATAGAGATGTTGTTATGAGTGTTACCAATGACGAGGATGACTCAGACATCAAGGTCACTGTGCCTCTTCTGCAAAAGTTGGTAGCAGAGGCAGTGGGAACATTCTTCATGATATTTGCAGGGTGTGGTGTGGTGGTTGTGAACCTCAACAACGACAAGGTGGTGACTCTTCCAGGAATTGCAATAGTTTGGGGGTTGGTTGTAATGGTGTTAGTATACTCTCTTGGACATATCTCTGGTGCTCATTTCAACCCTGCTGTTACCATTGCTCATGCTTCCATCAACAGGTTCCCTTGGAACCAGGTTCCTACTTATATATTCTCTCAAGTTCTTGGATCCACACTTGCAAGTGGTGCTCTCAGGCTCTTGTTTACTGGCAATGATAACCAATTTCCCGGAACCGTTCCATCTGCGACTCACATTCAAGCTCTTGTTATTGAATTCATAATCACTTTCTATCTCATGTTTGTCATCTCTGGGGTGGCCACAGATAACAGAGCGATTGGTGAATTAGCTGGACTTGCAGTTGGATCTACTGTTCTACTAAATGTGCTGGTTGCAGGGCCACTAACCGGAGCATCAATGAACCCTGCAAGAACATTGGGACCAGCTATTGTGCACAGTGAATACAAAGGAATATGGATATATTTTGTGTCAACCATTGTTGGAGCTGTGGCTGGTACATGGACCTACAATTTGGTTAGGTACACAAAGAAGCCGGTTCGTGAGATCACCAAGAGTGCCTCTTTCCTCAAGGGGACCACCTAG 783 0.4483 MSDNSNRDVVMSVTNDEDDSDIKVTVPLLQKLVAEAVGTFFMIFAGCGVVVVNLNNDKVVTLPGIAIVWGLVVMVLVYSLGHISGAHFNPAVTIAHASINRFPWNQVPTYIFSQVLGSTLASGALRLLFTGNDNQFPGTVPSATHIQALVIEFIITFYLMFVISGVATDNRAIGELAGLAVGSTVLLNVLVAGPLTGASMNPARTLGPAIVHSEYKGIWIYFVSTIVGAVAGTWTYNLVRYTKKPVREITKSASFLKGTT 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60650g00013 260 Gene3D Glycerol uptake facilitator protein. 3 252 IPR023271 -
Stsc60650g00013 260 NCBIfam MIP family channel protein 34 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 Pfam Major intrinsic protein 25 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 SUPERFAMILY Aquaporin-like 25 250 IPR023271 -
Stsc60650g00013 260 ProSitePatterns MIP family signature. 87 95 IPR022357 -
Stsc60650g00013 260 CDD MIP 30 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 151 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 219 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 106 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 69 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PRINTS Major intrinsic protein family signature 182 204 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc60650g00013 260 PANTHER AQUAPORIN NIP2-1 17 256 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60650g00013 Stsc-Chr60650 57248 58822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60650g00013 26 257 Major Intrinsic Protein MIP AT5G37820 62.931 4.24e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60650g00013 K09874 - gmx:100786924 378.637