Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60650g00007 ATGGATGAAGTTCAGGGAAGTTCAAGTTCTTTGCCTCCATTTCTCACAAAGACATATGAGATGGTGGATGATCCTTCCACCAATTCCATTATATCATGGAGTGACAGCAACAGGAGTTTTGTTGTTTGGAATCCACCGGAGTTTGCAAGGGTCTTATTACCAAAATTCTTTAAGCACAATAACTTCTCAAGCTTTATCAGACAACTCAACACTTATGGCTTTAAGAAGATTGACCCTGAACAATGGGAATTTGCCAATGATGATTTTGTAAGAGGTCAACCAAATCTTATGAAGAATATTCATAGGCGCAAACCCGTTCATAGCCATTCTTTGCAGAATCAACATGGACAAGTGGCTACACCACTAACTGAGTCAGAACGGAAGAGTTTAAAAAATAACATTGAAAAGCTTAAGCATGATAAGCAACAACAGATTCTGGAGCTAGAGAGAGAAGAACAGGATTGGCAAAAGTGTAAATTAAGAATAGAAAGCACAAAGAATCGTTTGGAGACAATAGAAAAGAGGCATGAAAATATGATTTCTTCTATTTCTCAAGTGTTGCATAGACCTGGGGCTGCATTTAATCTGCTGACACTGACAGAAAACATGGAAAGAAAACGAAGGTTGCCAAGAAGAGGTGGTCATTTTACTGATGAAGCTAGCATCGAAGATCCTATGGAAATATCTCAAATGTTACCTAGAGAAGATGCAGAGAGTAATGCCTTCATCACATCAAGCATAGAACGAATGAATCAGCTCGAGTCATCCCTGGTATTTTGGGAATATATTGCACAAGATGTGAATGAAACCCTTGTTCAAAGTTATTCAAACTTGGAAACTGATGAATCCATAAGTTGTCCCGATAGTCCAGCAGCAGCAGTATCTTGCGTGCAACTTGATGTTGAAGTTCAGCCTAAGTCATTTGGAATAGATATGAACTCTGAGCCAACTTTATCTGCTGGTTCTGATACTGTTGCATCCAAGGAACAACCTGTTGTAACTACCCCTGCAACCACTAGTTATAACGACGTATTCTGGCAACAATTCTTGACAGAAAATCCTGGTTCAACAGAATTGCAGGAGGCATAG 1089 0.393 MDEVQGSSSSLPPFLTKTYEMVDDPSTNSIISWSDSNRSFVVWNPPEFARVLLPKFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPNLMKNIHRRKPVHSHSLQNQHGQVATPLTESERKSLKNNIEKLKHDKQQQILELEREEQDWQKCKLRIESTKNRLETIEKRHENMISSISQVLHRPGAAFNLLTLTENMERKRRLPRRGGHFTDEASIEDPMEISQMLPREDAESNAFITSSIERMNQLESSLVFWEYIAQDVNETLVQSYSNLETDESISCPDSPAAAVSCVQLDVEVQPKSFGIDMNSEPTLSAGSDTVASKEQPVVTTPATTSYNDVFWQQFLTENPGSTELQEA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60650g00007 362 Coils Coil 162 182 - -
Stsc60650g00007 362 Gene3D - 6 104 IPR036388 -
Stsc60650g00007 362 FunFam Heat shock transcription factor 1 7 104 - -
Stsc60650g00007 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 251 IPR027725 -
Stsc60650g00007 362 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Stsc60650g00007 362 MobiDBLite consensus disorder prediction 104 125 - -
Stsc60650g00007 362 MobiDBLite consensus disorder prediction 110 125 - -
Stsc60650g00007 362 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60650g00007 362 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60650g00007 362 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60650g00007 362 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60650g00007 362 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60650g00007 362 Coils Coil 127 154 - -
Stsc60650g00007 362 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60650g00007 Stsc-Chr60650 36739 38177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60650g00007 7 362 HSF AT4G18880 52.066 1.00e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc60650g00007 HSF_DNA-bind 1.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60650g00007 K09419 - gmx:100820566 502.286