Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60650g00005 ATGGCTTCAGGGGCTATATTCTCGTCGCTGCGGCGGAGAAGGTCGCCGTCGCTGGAAGCATTTCTGGCTCCCGTTGACTTGACAGAGGTTGCACTCGTCCAAACCCTTGCTCACGTGGCCACCGAGCTCGTCACGTGCTTCTCCGATCGACCGTTCTTCTTCCAGCGCAAGAATTCGAGGTCACTGATCCGTAAAGTGGAGGTCTTTCAGCTGCTCCTGGAGTACCTTAGCGATTCTTCAGGCGCGTGTCTTCCACCTACCGCCGTGCTCTGCCTCAAGGAGCTGTACCTGCTTCTCTATCGGTCCAAGATTCTTCTTGATTACTGTGCTCAATCGAGTAAGTTGTGGCTTTTGCTTCAGAACCATTCGATTTCTGGCCATTTCCATGATTTGAACCAAGAAATTTCAACCCTTTTGGATGTTTTCCCAATTGGGGATATTGGGTTGAGTAAGGATGTTAGGGAACAAGTTGAGCTCTTGCAGAAGCATTCAAGGAAGGCTAGGTTGTTTATAGACAAGAATGATGATGCTCTTAGGATTAGATTTTTCTCTTTTTTTGATGAATTTGAGAGTGGCAGGATTCCTGATTCTGCTGAATTGAGGGATTTCTATGTTGAGAAGCTTCAGATTTTGGATGCTAGGAGTTGTAGAAGTGAAATTGAGGGTTTGGAAGAGCAGATTGTTAATCATGAAGGGGACATTGAGCCTACAATTTCTGTGCTCAATGGTTTTGTGGCTATGACGCGGTATTGCAGGTTCTTGCTCTTTGGGTTTGAGGAAGATGAACTTGCTATGGATAATGGTAGTCAGAAAAAGCTCAAGAAGAGGCTGATTACTCAGGAAATCGCCGAAACATTTATGACTGTTCCAAAGGACTTTTGCTGTCCGATATCGTTGGATTTGATGCGAGACCCGGTGATAATTTCCACAGGGCAAACATATGATAGGAGTTCCATTTCCAGGTGGATGGATGAAGGCCACACGACTTGTCCAAAAACAGGGCAAATGCTTGCCCACAATCGTCTTGTTCCGAACCGTGCGCTAAGGAATTTGATAGTGCAGTGGTGCTCTGCACATGGAGTTCCCCTCGAACAGCCAGAGGTTATGGATCCAATGGCTGAAACTTTTGCATCAGCTTGTCCATCCAGAACTTCCCTTGAAGCCAACAGAGCCACGGCGACACTCCTCATTCAGCAGCTTGCTAATGGATCGCAAGCCGGGAAGACTGTTGCTGCTAGGGAAATAAGAATGCTAGCCAAAACTGGTAAAGACAACCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCTCATCTTCGAAATTTACTATCATCTCCTAGTGCTGTTGCTCAGGAGAATTCTGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAAAGCCGGATCATGGATGCGGAAGGGTGTCTTGGATCCATTGTCGATGTCTTGAGATTCGGCCACACAACAGAGGCAAGGGAAAATGCAGCCGCGACATTGTTCAGCTTATCTGCAGTTCATGACTATAAGAAGAGGATTGCAGATAAGATGGGTGCTGTTGAAGCTTTGGCAGGATTGTTGCAAGAGGGGACTTCAAGAGGAAAGAAGGATGCTGTAACCGCTTTGTTCAATCTTTCCACTCATACCGAGAATTGCGTTAGAATGATAGAGGCAGGTGCAATAACGGCTCTAGTTGGAGCTTTGGGGAATGAAGGAGTCTCGGAGGAAGCAGCAGGTGCCTTAGCCTTGATTGTTCGGCAGCCAATTGGAGCGAAAGCAGTGGTGAAGGAAGAGACAGCAGTAGCCGGATTGATAGGCATGATGCGTTGTGGAACACCAAGAGGCAAAGAGAATGCAGTTGCAGCATTATTGGAGTTGTGCCGGAGTGGCGGTGCAGCTGCAACTGAGAGGGTGGTTAAGGCACCGGCTTTGGCCGGATTACTTCAGACCTTGCTTTTTACGGGAACAAAGCGCGCGAGACGAAAGGCAGCTTCACTTGCCAGAGTGTTTCAGAGATGTGAAGCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCCAGCAATTCAGCTGCAACTAGGGATACAAGCTTTGCTGGTGATGTTTCAGTGCCAATGTCCATTTCTGTGCCAGTTTTATAG 2145 0.4727 MASGAIFSSLRRRRSPSLEAFLAPVDLTEVALVQTLAHVATELVTCFSDRPFFFQRKNSRSLIRKVEVFQLLLEYLSDSSGACLPPTAVLCLKELYLLLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIGDIGLSKDVREQVELLQKHSRKARLFIDKNDDALRIRFFSFFDEFESGRIPDSAELRDFYVEKLQILDARSCRSEIEGLEEQIVNHEGDIEPTISVLNGFVAMTRYCRFLLFGFEEDELAMDNGSQKKLKKRLITQEIAETFMTVPKDFCCPISLDLMRDPVIISTGQTYDRSSISRWMDEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCSAHGVPLEQPEVMDPMAETFASACPSRTSLEANRATATLLIQQLANGSQAGKTVAAREIRMLAKTGKDNRAFIAEAGAIPHLRNLLSSPSAVAQENSVTALLNLSIFDKNKSRIMDAEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKMGAVEALAGLLQEGTSRGKKDAVTALFNLSTHTENCVRMIEAGAITALVGALGNEGVSEEAAGALALIVRQPIGAKAVVKEETAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEALHYGGLGVGYAFASNSAATRDTSFAGDVSVPMSISVPVL 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60650g00005 714 Gene3D - 33 145 IPR036537 GO:0007166
Stsc60650g00005 714 Pfam U-box domain 289 359 IPR003613 GO:0004842|GO:0016567
Stsc60650g00005 714 SMART arm_5 548 586 IPR000225 GO:0005515
Stsc60650g00005 714 SMART arm_5 422 462 IPR000225 GO:0005515
Stsc60650g00005 714 SMART arm_5 507 547 IPR000225 GO:0005515
Stsc60650g00005 714 SMART arm_5 587 628 IPR000225 GO:0005515
Stsc60650g00005 714 Gene3D - 392 668 IPR011989 -
Stsc60650g00005 714 FunFam RING-type E3 ubiquitin transferase 288 363 - -
Stsc60650g00005 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 518 560 IPR000225 GO:0005515
Stsc60650g00005 714 PANTHER U BOX DOMAIN-CONTAINING 58 672 - -
Stsc60650g00005 714 ProSiteProfiles U-box domain profile. 288 362 IPR003613 GO:0004842|GO:0016567
Stsc60650g00005 714 CDD RING-Ubox_PUB 290 342 IPR045210 -
Stsc60650g00005 714 Pfam Armadillo/beta-catenin-like repeat 423 461 IPR000225 GO:0005515
Stsc60650g00005 714 FunFam RING-type E3 ubiquitin transferase 365 686 - -
Stsc60650g00005 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 433 475 IPR000225 GO:0005515
Stsc60650g00005 714 SMART Ubox_2 292 355 IPR003613 GO:0004842|GO:0016567
Stsc60650g00005 714 SUPERFAMILY ARM repeat 394 670 IPR016024 -
Stsc60650g00005 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 288 362 IPR013083 -
Stsc60650g00005 714 Coils Coil 213 233 - -
Stsc60650g00005 714 SUPERFAMILY RING/U-box 278 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60650g00005 Stsc-Chr60650 27661 30082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60650g00005 1 714 U-box Gene Family AT1G29340 69.755 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60650g00005 - - gmx:100811153 1205.28