Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60650g00002 ATGACTAGGGCTGTCCGCAATAGGGTACTCAAGGATGCTAATGGTGATGTCAGTGATCATCTACGCAATCACATACATTTAACAAATTGCATTCACTTGAAGAACCACATGCACAAGAACAGCCCTATCCTGGCTGATAGGTCCCTCATGAGGGACCTTGTTGTGCTTCAGAGGTCACGCTCCCTCAGGGACCCTTCTGCCAGCCCTCAATCATGGAACTCACCGTCTGTAGTTGATATGCTTTTCAAAAAGGTTGAAAATGATGTCATGCTCCATGGAGGAAGAAGGTCTGTAGGCGGGGAGCGAAGGAAGGAAGGGAGGAGGTTGTCTGGAACTGGAACCTCTCCACCCTTGGTGAGCATTGGTACATCAAGAGTTGCTCCGGGTGATGCTAGTAGAGGCAATGATGGGGTGCCAGCAACTAGTGAACGTAGTAGCAAGAGTGGAATTGGGGATGGGAAGAGAGTTGGGAGAGAAGAATCTGGTAGAAAGAGTGATAGGCCTGATTATGTGGATGTTAGTCAAGCTACCAAAACTTTGACAGAAGATGTAGCTTCAAGGCACTCTGAATCTAAAGGGAGAAAGAAACATAAAGGGAAAAATGTTCGAGGTGTTCAAGTTAAGACCCTTTCTGAACAGCTTAATGATATTCCCTTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGTGGAAGGTTTCCTAGACAGGAGAAGATTATTGAGGAGGCAGAAGCCAGTGTGCGTGGTCATGGAAGTCGGGTGAAGAGGCGGAAATTTCGAAGCACAAGAAGAGCTCGGGTGGCTACAGCCTCAAGAGATACTGGTGCTGAGAATGAACTGTCAGTGGCCTCCAACTCATTAGCTCATGGTTCAGCCCACCAGAGATATCACTCAGAGGAGGCTGATGAGTACCTGGATGGAAATGTTACAAGGGCTCCCAAAAATGGGTGTGGCATTCCCTGGAATTGGTCCAGGATTCATCATAGAGGTAAAACATTCCTTGACATGGCTGGGAGAAGTTTTTCTTGTGGTTTATCTGACTCAAGGTTGAGGAAAGGGCTAAATGCCAATGGAAGAAATATTTCTGAAATGCCTGTGGCATCTGAGAACTCAGCTTCATCTACTAAATCTGATGCAGAGGCAATGCCTTTATTACTTGATGCATCTGGGAGCACTGAAAATGCTTGTTGGGACCATGACTATTCTGGGGAACTAGGCCTTTTTGGTGATAATTTGTTCAACCGTGATATTGATTCTGACCTTGCTTCTGAAGCTAGATCTGGTGAACAACATAAGTCGAGAGGGAATCGTCGCGGTAGACACCAAAGCTTAACACAAAAGTATATGCCGCGAACTTTCAGAGATATGGTTGGGCAGAGTTTAGTGGCACAAGCTCTTTCGAATGCCGTAATGAGGAGAAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCACGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCATTGAATTGTAACTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATGGCACATGATATGGGAAAGAGTAGAAATATAAGGGAAGTTGGGCCGGTCACTAATTTTGACTTCGAGAGCATCATGGATCTTCTTGATAATATGATTGTATCCCAGCTCCCATCACAGTACAGAGTATTCATTTTTGATGACTGTGATACTTTATCAGTGGAGTGTTGGAATGCCATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCTGTTCTAGTCTTGATGTCCTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTTCCAAAGCTGAAGGATGGAGACATTATATATACATTGCAGTTAATTGCAACCAAGGAAGGTCTAGATATTGATAAGGATGCCTTGAAACTCATCGCATCGAGATCTGATGGTTCGTTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTTGTTCAGGAGCTGGTAGGACTTATCTCTGATGAGAAATTGATTGATCTACTTGATTTGGCATTATCTGCTGACACAGTCAATACTGTGAAGAATTTGAGGGTTATCATGGAAACTGGTGTTGAGCCATTAGCATTAATGTCACAGCTCGCCACAGTAATCACTGATATACTTGCTGGGACATACGACTTCACGAAAGAAAGGCAAAGAAGGAAGTTCTTCCGGAGACAGCCGTTGTCTAAAGAAGACATGGAAAAGCTTCGCCAAGCACTAAAAACATTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGACAAGCTTACATGGCTGACGGCTGCGTTGCTTCAACTTGCTCCTGATCAACAATATGTGATGCCTACTTCATCTGATAATAGCTTCAACCATAGTCCACTAGCTCTAAACAATTCTGGTGTCAGAGAAGCAACCAGAATAAATGGCAACCCTGTTGAAATTCCTGGCAAAGCAAGACAATTATCAGTAGATTCTAGATTGGAAAACTTCCATGCAGGCAACCCAGCTAATGGTATGGCAAAAGACCTTAGTACAGAGAAAAGAAGACTCAGTGTGTCTGGTTCTGCCACTCAACAAACTTATTCCCATACGGCCAACAAGAGTAGGATGAATGAAAGACAGATATTGAGTAAAAACCATAAAGGTATTGAAGAGATGTGGTTAGAGGTTCTTGAGAGGATTCAAGTAAGTGGCCTGAGAGAATTTTTGTATAAAGAAGGCAAGCTGATATCTGTTAGTTTTGGAGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAAATGACCAAATCTACGGCCGAGAAGTTCACAGGTCACATTTTACAAGCATTTGAATCTGTCCTTGGAACATCAATAACGCTAGAAATTAGATGCGAGTCAACTAGAGATGCAGGTTCAGCTGTTCAACTTCCTCTTACATTGCCTGCTACTGATGATAGTTCGTCACACATTAGAGACTTAAGTGGTGTTGGTGTAACTCGAGCTCATCCAAGGGGTGAAATCATAGAAGAAGCAGCTTCTCCAGTGGAGCACAAGAATGATGCACAGCAGGTTGATACTCATGCAGCTTCCCAGAGAAATCCGATTGTCAAGTCTCACTTGGACCGCAGAAGGCTTAGGGAACAAGGTCAAAGTAAAAGCATTGTGAAAAGTAAGGTATCCCTTGCTCATGTAATCCAGCAGGCAGAAAGCCAGCGAAGCGGGTGGTCGAAACGCAAAGCAGTTTCCATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAACCAAGATCAAGGAGCTTACTTTGCTGGAAAGCATCAAGAGCAACGCGTCAGAAGCTGTCGCGCTTGAAAATTCGAACCCGAAAACCACGTGCATTGCTGAAGCTGGTCTCATGTGGGAGATGTCTCTCTTCAAAATCTCCAAGATAG 3471 0.437 MTRAVRNRVLKDANGDVSDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPQSWNSPSVVDMLFKKVENDVMLHGGRRSVGGERRKEGRRLSGTGTSPPLVSIGTSRVAPGDASRGNDGVPATSERSSKSGIGDGKRVGREESGRKSDRPDYVDVSQATKTLTEDVASRHSESKGRKKHKGKNVRGVQVKTLSEQLNDIPLDSDDLASSNIHFRGRFPRQEKIIEEAEASVRGHGSRVKRRKFRSTRRARVATASRDTGAENELSVASNSLAHGSAHQRYHSEEADEYLDGNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLRKGLNANGRNISEMPVASENSASSTKSDAEAMPLLLDASGSTENACWDHDYSGELGLFGDNLFNRDIDSDLASEARSGEQHKSRGNRRGRHQSLTQKYMPRTFRDMVGQSLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCMAHDMGKSRNIREVGPVTNFDFESIMDLLDNMIVSQLPSQYRVFIFDDCDTLSVECWNAISKVIDRAPRRVVFILVCSSLDVLPHIIISRCQKFFFPKLKDGDIIYTLQLIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLIDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERQRRKFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVMPTSSDNSFNHSPLALNNSGVREATRINGNPVEIPGKARQLSVDSRLENFHAGNPANGMAKDLSTEKRRLSVSGSATQQTYSHTANKSRMNERQILSKNHKGIEEMWLEVLERIQVSGLREFLYKEGKLISVSFGAAPTVQLMFSSQMTKSTAEKFTGHILQAFESVLGTSITLEIRCESTRDAGSAVQLPLTLPATDDSSSHIRDLSGVGVTRAHPRGEIIEEAASPVEHKNDAQQVDTHAASQRNPIVKSHLDRRRLREQGQSKSIVKSKVSLAHVIQQAESQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRQKLSRLKIRTRKPRALLKLVSCGRCLSSKSPR 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60650g00002 1156 MobiDBLite consensus disorder prediction 870 889 - -
Stsc60650g00002 1156 MobiDBLite consensus disorder prediction 425 445 - -
Stsc60650g00002 1156 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 447 826 - -
Stsc60650g00002 1156 SMART AAA_5 477 618 IPR003593 GO:0016887
Stsc60650g00002 1156 Gene3D - 621 681 - -
Stsc60650g00002 1156 CDD HLD_clamp_pol_III_gamma_tau 618 681 IPR045085 -
Stsc60650g00002 1156 Gene3D - 436 615 IPR027417 -
Stsc60650g00002 1156 FunFam DNA polymerase III subunit gamma/tau 619 681 - -
Stsc60650g00002 1156 MobiDBLite consensus disorder prediction 148 171 - -
Stsc60650g00002 1156 Pfam DNA polymerase III, delta subunit 461 618 - -
Stsc60650g00002 1156 Coils Coil 754 781 - -
Stsc60650g00002 1156 NCBIfam DNA polymerase III subunit gamma/tau 444 792 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Stsc60650g00002 1156 SUPERFAMILY post-AAA+ oligomerization domain-like 689 792 IPR008921 GO:0003677|GO:0006260
Stsc60650g00002 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 665 IPR027417 -
Stsc60650g00002 1156 MobiDBLite consensus disorder prediction 92 109 - -
Stsc60650g00002 1156 Pfam DNA polymerase III subunits gamma and tau domain III 674 793 IPR022754 GO:0003887
Stsc60650g00002 1156 MobiDBLite consensus disorder prediction 92 204 - -
Stsc60650g00002 1156 FunFam DNA polymerase III subunit gamma/tau 440 617 - -
Stsc60650g00002 1156 ProSiteProfiles IQ motif profile. 238 267 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60650g00002 Stsc-Chr60650 13958 18402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60650g00002 444 742 Core DNA Replication Machinery Family AT1G21690 24.262 1.53e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60650g00002 - - gmx:100809005 1853.18