Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60646g00003 ATGGAGTTCGGTAGGATCGGACCCACCGACCCAGGTGGTTCCTCACGGCGTTCCACCGCTCCTCTCACCGGAGCTTCTTCCGATTCCACTTCTTCAAGAAACAAGAAGAAGCTCATCATGATCTCCCTCCTGGCCACAGCCTTGATAGTTGCCTCCGCCATCTCCGCTGCTTTAATCGCCGTCACCCGGTCCCGTGCCTCGGCCGCAAACTCCCCCAACCTCCGCCGGGAACCAACTGAGGCAATCTCCAAGACCTGCAGCAAGACCCGGTTCCCCACACTCTGCATAAACTCCCTCATGGACTTCCCGGGGTCTGAAACCGCCACGGAGCAAGACCTTGTCCACATTTCCTTCAACATGACCCTTCGCCACGTCAGCAACGCCTTCTACGCTTCCACAGGCATAGCCTTCGGTGACACGGACTCGCGAATCGATACCGCCTACCAAGACTGCCTCGAGCTCCTAGATGGCTCCATGGATTCGTTAGCGCGGTCGCTGCGCTCCGTCGCCCCATCTCTCGACTCATCCTTCGGCGACGAAGCCATAAGGCCCGCCACCGTGGGGTCCGTCGAGGACGTGACGACGTGGCTCAGCGCAGCGCTGACGAACCAGGACACGTGCTCCGAGGGGCTCGAGAACGCGACAGGAACACTGAAGGACCAGATGGTTAATAATTTGAAGAACTTGGCGGAACACGTGAGCAATTGTCTCGCGATATTCTCGGCGGGAAGTGGCGGTGGCGATTTCTCGGGGGTGCCCATACAGAACAAGAGACGGTTATTGGGAACCGGAGAGGAGGAGGAGAATAATAATAACAATAACAATGCTGATTCTGACGATGAATCCGATATCTCGGGAGAAAATGATGAGAATAATAATCGTTTTCCAAGATGGTTGAGCAAACGAGATAGGAGATTGCTGAGTTTGCCGGTATCGGCGATACAAGCCGATATAATAGTGTCTAAGAACGGTGATGGAACAGTGAAGACAATCAAAGAGGCGATTAAGAAGGCGCCGGAGAAAAGTAGCCATCGCTTCATAATATACGTTAAGCAAGGAAGGTATGAGGAGGATGATTTAAAAGTGGGTAGAAAGAAAACCAATCTAATGTTCATAGGAGATGGAAAGGGCAAAACCGTCATCACAGGAAATAAAAATGTTGCTGATGGCATGACCACATTCCACACAGCATCATTCGCTGCTAGTGGTGCTGGTTTCATTGCACGAGACATCACGTTTGAAAACTACGCCGGACCACAGAAGCACCAAGCAGTGGCTCTCCGGGTCAGCGCCGACCACGCTGTGGTTTACCGGTGCAGCATCAAAGGCTACCAAGATGCATGCTATGTCCATTCCAACCGTCAGTTCTTCCGGGAATGCGATATTTATGGCACGGTAGATTTCATATTTGGAAATGCTGCCGTGGTTTTCCAAAAATGTAACATCTATGCTAGAAAACCCATGGCCCAACAAAAAAACACAATCACGGCCCAAAACAGAAAGGACCCAAATCAAAACACGGGTATATCGATCCATGATTCTCGGATACTACCCGCCCCAGATCTCGCAGCGGCAAAAGGCAGTGTTTCCACCTATTTGGGCCGTCCCTGGAAACAATACTCGAGAACAGTGTATCTATTGTCTTACATGGGTGATCATATAAACCCTAGTGGGTGGCTGGAGTGGAATGGGGACTTTGCATTAGACACATTGTATTACGGTGAGTACATGAATTTTGGGCCGGGTGCAGCCGTGGGCCAACGGGTCACATGGAAGGGGTACCGGGTTATCACGTCAACAGTAGAGGCAAGTAGATTTACAGTGGCCCAATTCATCTCCGGCTCGGCGTGGCTACCGTCCACCGGAGTGGCATTCTTGGCTGGGTTGTCAACTTGA 1896 0.5179 MEFGRIGPTDPGGSSRRSTAPLTGASSDSTSSRNKKKLIMISLLATALIVASAISAALIAVTRSRASAANSPNLRREPTEAISKTCSKTRFPTLCINSLMDFPGSETATEQDLVHISFNMTLRHVSNAFYASTGIAFGDTDSRIDTAYQDCLELLDGSMDSLARSLRSVAPSLDSSFGDEAIRPATVGSVEDVTTWLSAALTNQDTCSEGLENATGTLKDQMVNNLKNLAEHVSNCLAIFSAGSGGGDFSGVPIQNKRRLLGTGEEEENNNNNNNADSDDESDISGENDENNNRFPRWLSKRDRRLLSLPVSAIQADIIVSKNGDGTVKTIKEAIKKAPEKSSHRFIIYVKQGRYEEDDLKVGRKKTNLMFIGDGKGKTVITGNKNVADGMTTFHTASFAASGAGFIARDITFENYAGPQKHQAVALRVSADHAVVYRCSIKGYQDACYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDSRILPAPDLAAAKGSVSTYLGRPWKQYSRTVYLLSYMGDHINPSGWLEWNGDFALDTLYYGEYMNFGPGAAVGQRVTWKGYRVITSTVEASRFTVAQFISGSAWLPSTGVAFLAGLST 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60646g00003 631 Pfam Plant invertase/pectin methylesterase inhibitor 81 239 IPR006501 GO:0004857
Stsc60646g00003 631 CDD PMEI-like_3 86 245 - -
Stsc60646g00003 631 FunFam Pectinesterase 311 629 - -
Stsc60646g00003 631 Gene3D - 311 629 IPR012334 -
Stsc60646g00003 631 Pfam Pectinesterase 317 614 IPR000070 GO:0030599|GO:0042545
Stsc60646g00003 631 SMART PMEI_2 77 239 IPR006501 GO:0004857
Stsc60646g00003 631 MobiDBLite consensus disorder prediction 1 31 - -
Stsc60646g00003 631 SUPERFAMILY Pectin lyase-like 312 628 IPR011050 -
Stsc60646g00003 631 PANTHER PECTINESTERASE 50 619 - -
Stsc60646g00003 631 MobiDBLite consensus disorder prediction 263 296 - -
Stsc60646g00003 631 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 241 IPR035513 -
Stsc60646g00003 631 NCBIfam pectinesterase inhibitor domain 61 240 IPR006501 GO:0004857
Stsc60646g00003 631 ProSitePatterns Pectinesterase signature 2. 462 471 IPR033131 -
Stsc60646g00003 631 MobiDBLite consensus disorder prediction 12 31 - -
Stsc60646g00003 631 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 242 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60646g00003 Stsc-Chr60646 30289 37063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60646g00003 1 630 Carbohydrate Esterase AT5G53370 60.348 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60646g00003 - - gmx:106796002 920.228