Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60641g00009 ATGATAGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTGCTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGTTGAACAGACTGTTGTTCAAATGAAAGTGGTTTTGGCATTTGTTGATGAGAATAGAGCACTGCAAGGTTACTCATCTGCATTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGTAAAGGGAATGGGATTGGGTGCCACTTTGTTGTTTTCTGCTGCTATGCTCTTTTGCTTTGTTTGA 276 0.4203 MIAVIGAIHTTTLAKLSAKSQEALSQAGNIVEQTVVQMKVVLAFVDENRALQGYSSALRIAQKLGYKTGFVKGMGLGATLLFSAAMLFCFV 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60641g00009 91 SUPERFAMILY ABC transporter transmembrane region 2 88 IPR036640 GO:0005524|GO:0016020
Stsc60641g00009 91 Gene3D ABC transporter type 1, transmembrane domain 1 91 IPR036640 GO:0005524|GO:0016020
Stsc60641g00009 91 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 91 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60641g00009 91 PANTHER ABC TRANSPORTER B FAMILY 2 86 IPR039421 -
Stsc60641g00009 91 Pfam ABC transporter transmembrane region 2 88 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60641g00009 Stsc-Chr60641 30262 31058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60641g00009 1 89 Calmodulin-binding Proteins AT2G36910 74.157 1.46e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60641g00009 K05658 - gmx:100777382 135.191