Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60641g00008 ATGGTACTCCAAAGGCTATTAGTATTTCATGGTCCATTAGTGAGAACTGAGAAGTTGGGTAATTTCATTCACTACTTAGGCACATTTATTTCTGGGTTTACTGTGGGAGTCAGTGCTGTGTGGCAACTAGCACTTGTCACTCTTGTTGCAGTTCCTATGATAGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTGCTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGTTGAACAGACTGTTGTTCAAATGAAAGTGGTTTTGGCATTTGTTGATGAGAATAGAGCACTGCAAGGTTACTCATCTGCATTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGTAAAGGGAATGGGATTGGGTGCCACTTTGTTGTTTTCTGCTGCTATGCTCTTTTGCTTTGTTTGA 432 0.419 MVLQRLLVFHGPLVRTEKLGNFIHYLGTFISGFTVGVSAVWQLALVTLVAVPMIAVIGAIHTTTLAKLSAKSQEALSQAGNIVEQTVVQMKVVLAFVDENRALQGYSSALRIAQKLGYKTGFVKGMGLGATLLFSAAMLFCFV 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60641g00008 143 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 16 143 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60641g00008 143 Gene3D ABC transporter type 1, transmembrane domain 14 143 IPR036640 GO:0005524|GO:0016020
Stsc60641g00008 143 PANTHER ABC TRANSPORTER B FAMILY 15 138 IPR039421 -
Stsc60641g00008 143 Pfam ABC transporter transmembrane region 16 140 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60641g00008 143 SUPERFAMILY ABC transporter transmembrane region 18 140 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60641g00008 Stsc-Chr60641 29497 31058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60641g00008 16 141 Calmodulin-binding Proteins AT2G36910 74.603 1.28e-57 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60641g00008 K05658 - gmx:100777382 194.512