Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60641g00007 ATGGTACTCCAAAGGCTATTAGTATTTCATGGTCCATTAGTGAGAACTGAGAAGTTGGGTAATTTCATTCACTACTTAGGCACATTTATTTCTGGGTTTACTGTGGGAGTCAGTGCTGTGTGGCAACTAGCACTTGTCACTCTTGTTGCAGTTCCTATGATAGCTGTCATTGGAGCCATTCACACAACCACTTTGGCCAAGCTCTCTGCTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGGAACATTGTTGAACAGACTGTTGTTCAAATGAAAGTGGTTTTGGCATTTGTTGATGAGAATAGAGCACTGCAAGGTTACTCATCTGCATTGAGGATTGCTCAGAAGCTTGGATACAAAACTGGATTTGTAAAGGGAATGGGATTGGGTCTCTAA 393 0.4198 MVLQRLLVFHGPLVRTEKLGNFIHYLGTFISGFTVGVSAVWQLALVTLVAVPMIAVIGAIHTTTLAKLSAKSQEALSQAGNIVEQTVVQMKVVLAFVDENRALQGYSSALRIAQKLGYKTGFVKGMGLGL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60641g00007 130 PANTHER ABC TRANSPORTER B FAMILY 15 129 IPR039421 -
Stsc60641g00007 130 Gene3D ABC transporter type 1, transmembrane domain 14 130 IPR036640 GO:0005524|GO:0016020
Stsc60641g00007 130 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 16 130 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc60641g00007 130 SUPERFAMILY ABC transporter transmembrane region 18 126 IPR036640 GO:0005524|GO:0016020
Stsc60641g00007 130 Pfam ABC transporter transmembrane region 16 126 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60641g00007 Stsc-Chr60641 28731 31058 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60641g00007 16 129 Calmodulin-binding Proteins AT2G36910 78.947 2.97e-56 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60641g00007 K05658 - gmx:100777382 190.66