Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60640g00008 ATGCCGGGATTTCCAAGGCATATTGTTAAAGAAGGAAAGAAATGCAAGAAAGGAAGAGAAGGAAACTTGAACATCATGAAGAGAATTAGAATAATTTATAGTGATCCAGATGCAACAGATGATTCAAGCCAAGAAGATGAAAGTCTTCTGAGGAATGACTATGAACAACATGGTCCTAAGCGATTCAACAAAGAAATCTTGGTTCCATGCATGGCAACCAAATCAAATGAAGTGGATGATGATGATGATTCTTTACAACAAGGCATTAGCATTGACAAGATCAAACCATGTCTTAACCTTTTGCGAAGCCGTAGGAGCCGGAGATCATCCAGCAAGTACAAAGGTGTTCAAAGAAGGAAATGGGGGAAGTATGTGGCAGAAATCCGAGACCCCATCCGAGGCGTGCGAGTGTGGCTCGGTACTTTCAATACCGAGGAAGAGGCTGCAATGGCTTATGAGAAGAAGAGAATTGAATTTGAGAACTCATTGATGGATTTTGGGAAAATGGTTGGTTCATTGGAGTTGGAAGATGGCAATCAAGTGTTGTCTCAACAATCCCCAGCATCTGTGCTTGATGTCACGGCTACAAGAGCATCACCTGATAATGATAGCAATGGATCAGTTGCAGGTAAGGGCAATGTTGAAACCAGTGCTCTTCAAGGTGTAATGGAACCTGTTCATGTGGAAGATCATGATTCATTTCAGCATTTACTTGAGGAGTCAATTGTGCAATCACTGCTTGGGCATGAATTTGATAGTTTCTTGGTCAATGACAATGGTGGCTGTGCTATGTGGGATGTGAAAGATGGTGAAGGTAGCAGCACTCTTCCACATATTGAAACTGTTTTTGATGATTCAGAGTTGACTTGGATTGATGAGAATTTCACAAGGGAGGTCCAAGGAAGAAGAGTGCGGACATCAACTGTAGGATGCGGTGGAATGCTGCATCAATCTACAACCTTGTTTATAAGCTCAAGGCTTGGATGGACCTCACATATCCAGCAAACAGTTAGAGTGATACATTGA 1026 0.4211 MPGFPRHIVKEGKKCKKGREGNLNIMKRIRIIYSDPDATDDSSQEDESLLRNDYEQHGPKRFNKEILVPCMATKSNEVDDDDDSLQQGISIDKIKPCLNLLRSRRSRRSSSKYKGVQRRKWGKYVAEIRDPIRGVRVWLGTFNTEEEAAMAYEKKRIEFENSLMDFGKMVGSLELEDGNQVLSQQSPASVLDVTATRASPDNDSNGSVAGKGNVETSALQGVMEPVHVEDHDSFQHLLEESIVQSLLGHEFDSFLVNDNGGCAMWDVKDGEGSSTLPHIETVFDDSELTWIDENFTREVQGRRVRTSTVGCGGMLHQSTTLFISSRLGWTSHIQQTVRVIH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60640g00008 341 Pfam AP2 domain 111 161 IPR001471 GO:0003700|GO:0006355
Stsc60640g00008 341 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 188 - -
Stsc60640g00008 341 Gene3D AP2/ERF domain 111 166 IPR036955 GO:0003700|GO:0006355
Stsc60640g00008 341 CDD AP2 112 159 IPR001471 GO:0003700|GO:0006355
Stsc60640g00008 341 SUPERFAMILY DNA-binding domain 111 161 IPR016177 GO:0003677
Stsc60640g00008 341 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Stsc60640g00008 341 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Stsc60640g00008 341 SMART rav1_2 112 166 IPR001471 GO:0003700|GO:0006355
Stsc60640g00008 341 ProSiteProfiles AP2/ERF domain profile. 112 176 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60640g00008 Stsc-Chr60640 50014 52237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60640g00008 26 160 AP2-EREBP Transcription Factor Family AT1G68550 40.000 1.52e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60640g00008 AP2 1.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60640g00008 - - aip:107642108 458.373