Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60640g00004 ATGAAGGGTTGTTCTTCAAGAGCATGTGATAGCTGCTTAAGAGTAAGAGCAAGGTGGTTTTGTGCTGCAGATGATGCTTTCCTCTGCCATGGCTGTGACAATTTGGTTCACTCTGCTAACCAGTTAGCGAGCCGCCATGAAAGGGTTAGGCTCCAAGCATCATCAGCATCCTCCTCATCCAAGATGATGATGATAAGAACCATTGCTGCAACTGAAGCTGAAGCTGAAGGACAAGCTTGGTGCAGTGGCTTCACGCGCAAGGCAAGAACCCCGCGCCATAATAACAAGAATTATTTGGTGCAGCAGCAGCAGCAAGAAGAAGGAAAAGATGATGAGGAAGAAGGGGTTTTCATCAACTACCATAGTTCCATGTTTCTTCCTGTTGTGCCTGAGCTTGGAAGTGAAGATCAGATGCTTCTTGATGATTATGAAACTGAGGATCAGATGCTTTGCCGCGTGCCGGTGTTTGACCCTTTTGATGATGATTCTGAGCTTTGTAGTGTTTACAATGAAGTGAAGAAGAAGAAACAGCATAAGAAGAAGAAGAACAATGATGATGCTGATGCAGAAGGTGAAGTGCCCTTTGGCTTGGAGAATTTCTCTGAGCTTCTTCCAAGAGATGATGTGGATCTTTCTGAGTTTGCTGCTGATGTAGAAAACTTGCTTGATATTGAAGATGGTGTGGAAATTAAAGAAGAACATGAACGAGATAATGATGATAATAAAGGTGCAACAAGAATGATTAAGGTTAAGGATGAATTATTACAAGTTACTAAGAACAATGATGATGATTGTAATTTGGAGTCAATTCTTAATTGGAATATTGACTCATCAAAATCAATGATGGTGGGAGTAGTAGAACATGAAGAAGAAGAAGAGGAGGAGGAAAATAATAAGGTTCCAGTGATGGTGGCAAGTGGCGGTAATAGTAATAGTAGTGAAGTGGAAATAAAAAAGAAAGAGAGGCTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACACCAAATCCACCAAACTTCAACTTTGTTGATGATTGTTGGCCACATTGCTTGGGTTCAAGTAGTGGTGGCTTAGATGGTGAAGTAAGAAACATAATAAGATGGAATGAAGGAGGGGGAGTAGTTGATGATGGAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAAAAGAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGATATGAAGTGAGGAAGCTCAATGCTGAGAAACGACCAAGAATGAAGGGTCGTTTTGTCAAGAGAACATCATCATCATCATCCTCCTCCTTTGTTGGAGGAGCCATTAGTGCTGCTTCTTTTCCACCTCATCAATTCCCACTCACATCAAATTAA 1386 0.4127 MKGCSSRACDSCLRVRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQASSASSSSKMMMIRTIAATEAEAEGQAWCSGFTRKARTPRHNNKNYLVQQQQQEEGKDDEEEGVFINYHSSMFLPVVPELGSEDQMLLDDYETEDQMLCRVPVFDPFDDDSELCSVYNEVKKKKQHKKKKNNDDADAEGEVPFGLENFSELLPRDDVDLSEFAADVENLLDIEDGVEIKEEHERDNDDNKGATRMIKVKDELLQVTKNNDDDCNLESILNWNIDSSKSMMVGVVEHEEEEEEEENNKVPVMVASGGNSNSSEVEIKKKERLLRLNYEEVISAWASQGSPWTTPNPPNFNFVDDCWPHCLGSSSGGLDGEVRNIIRWNEGGGVVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSSSFVGGAISAASFPPHQFPLTSN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60640g00004 461 ProSiteProfiles Zinc finger B-box type profile. 4 51 IPR000315 GO:0008270
Stsc60640g00004 461 ProSiteProfiles CCT domain profile. 390 432 IPR010402 GO:0005515
Stsc60640g00004 461 CDD Bbox1_BBX-like 8 51 - -
Stsc60640g00004 461 SMART bboxneu5 4 51 IPR000315 GO:0008270
Stsc60640g00004 461 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 6 435 - -
Stsc60640g00004 461 Pfam CCT motif 390 432 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60640g00004 Stsc-Chr60640 40024 42367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60640g00004 3 434 C2C2-CO-like Transcription Factor Family AT1G68520 40.308 2.56e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Stsc60640g00004 CCT 1.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60640g00004 - - aip:107644315 453.751