Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60640g00002 ATGCGACTAAGCTGCAACGGTTGTCGTGTCCTTCGCAAAGGTTGCAACCCTGAATGCCCCATTAAACCCTGCCTCCATTGGATCAAATCGCCGGAATCACAGTCCAACGCCACCCTCTTCCTCGCCAAGTTCTACGGCCGCGCTGGCCTCCTCAACCTCCTCACCGCCGGCGATCCCAAAATCCGCCCAGCAATTTTTAAATCTTTGCTATACGAAGCTTGTGGCCGGATAGTGAACCCGGTTTTCGGTTCGACCGGATTGTTATCGACCGGGAGCTGGAACTTGTGTGAAGCAGCTGTTCAAGCCGTTCTTAGCGGCGCGCCGATTCAGCAACACGCCGATTTAGATGGCGCGGGCCAGAAGCTAAACCCGTCTGATATTCGCCACGTGGCCAAGAGAGGGAAATCTTGCGGCTCAGATCATGTTCTTAAGCCCCGGAAGAGCCAATTCAAGAGACGCGCTGAAAAGCCGAATTCGAAGCCGGAGGTGGAGCTGGATAACGGTGTAGCCGAGTTGGTGGTGGAGGCTTGTGTAATGAATGAGTTAGATGAATCGGCGAGTCCTGACTCAGGGTCTGGGGTGAGTGAGCACGTAAGTGTTGTCGTTGGAGGTAGCGGCGCAGAAGCTGATAGCGGTTCAATTGAGAGTGTCAATACGGCTCGAGCCGATGATGGGGAGATTGAGCTGGAGCTGACCTTGGGGTTTCAGTGGCTTTGA 717 0.5453 MRLSCNGCRVLRKGCNPECPIKPCLHWIKSPESQSNATLFLAKFYGRAGLLNLLTAGDPKIRPAIFKSLLYEACGRIVNPVFGSTGLLSTGSWNLCEAAVQAVLSGAPIQQHADLDGAGQKLNPSDIRHVAKRGKSCGSDHVLKPRKSQFKRRAEKPNSKPEVELDNGVAELVVEACVMNELDESASPDSGSGVSEHVSVVVGGSGAEADSGSIESVNTARADDGEIELELTLGFQWL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60640g00002 238 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Stsc60640g00002 238 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Stsc60640g00002 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60640g00002 Stsc-Chr60640 24696 26070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60640g00002 1 236 AS2 family AT3G02550 45.868 2.78e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc60640g00002 LOB 2.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60640g00002 - - ccaj:109797229 262.307