Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60639g00002 ATGCCGTTAGAAGGGATTTTCATGGAAGCAAGAAGTTCATCAACAACTCCTCCACCTCCTCTTCCTGCTCCTGATCTTTCCCTTCAAATAAGCCCTCCAAGTAGTACCTCTTCATCTTCTTTGATTTGCAAGGGTATTAGTAGTAGTAGTACCAGTAATAACAACATCTTCTTCCCTGAGCTCTCTCTTGGAACCATTAATTCTAACACTACTATTCCTCCTCCTCATCATAATAATAATCACATCAACTATGGAGGTGTTTCCGTTTCACTGCTTCATCAAGATTCCGACGCCGCCGGGTTTAGGAGGCCGCCAATCAAGGGTATTCCGGTGTATCACAACCGTTCGTTCCCTTTCATGCCGTCACCGTCACCGTCAACAATAATGGAACATCATTCTAGAGAAAACAACAAGATTAACATGTGCTCCTATCAACACCACCACATCATGATCCCTTCTTCACCTTCACAACAAACTAATAATAACTACTTTATTGGAGCCGTACCTTCTTCTTCTTCTTTGCCGGGTTTGGATCCAATCACGAGGCTCAATGCCTTCAAATCTCATCATCATCCATTGCACCCTCATCATCATCATCATCATCATGAAGTGGCATCTTCACATCATCATCACGGTGGGTTTATGATGAGATCCAACAGATTCTTGCCGAAGCTACCAACAAAGAGGAGCATGAGAGCCCCCAGAATGAGGTGGACAAGCACCCTCCATGCCCGATTTGTTCATGCTGTTGAGCTTCTTGGCGGTCATGAAAGAGCAACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCCCATGTCAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCCTCTTCAGATGGATCCGGGGATGATGACATGTCGCCAGTGGGCGGCAGCGGTGACTATAGTGGTAGCCTCCGACAGTTTCCGGAGCAAAGAGGGCGGCCGGATCGATCATTATTGCAACAAGATATGGACTACTCTTCCACCACCACCACTCTATGGAGTAATTCTTCAAGTTGTAGAGAGACATGGCAACAAACTACATCTGATATAAATGGTCTAAGACAACCTATCTTACACTCTCAAACAAAATCAGGAGGGCATAATAATCATATTCAGGAGTGTGATTCAACGCAAGTGAAGAACAATTTGCAAGGTTCTAATAATTTGGAATGCAAGAACCCATGCTTGGAGTTCACATTAGGCAGACCAGATTGGAATGGCAAAGAACAAGCCTAA 1281 0.445 MPLEGIFMEARSSSTTPPPPLPAPDLSLQISPPSSTSSSSLICKGISSSSTSNNNIFFPELSLGTINSNTTIPPPHHNNNHINYGGVSVSLLHQDSDAAGFRRPPIKGIPVYHNRSFPFMPSPSPSTIMEHHSRENNKINMCSYQHHHIMIPSSPSQQTNNNYFIGAVPSSSSLPGLDPITRLNAFKSHHHPLHPHHHHHHHEVASSHHHHGGFMMRSNRFLPKLPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPAASSDGSGDDDMSPVGGSGDYSGSLRQFPEQRGRPDRSLLQQDMDYSSTTTTLWSNSSSCRETWQQTTSDINGLRQPILHSQTKSGGHNNHIQECDSTQVKNNLQGSNNLECKNPCLEFTLGRPDWNGKEQA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60639g00002 426 Gene3D - 233 290 - -
Stsc60639g00002 426 MobiDBLite consensus disorder prediction 189 207 - -
Stsc60639g00002 426 MobiDBLite consensus disorder prediction 189 212 - -
Stsc60639g00002 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 234 287 IPR006447 GO:0003677
Stsc60639g00002 426 FunFam Myb family transcription factor 232 290 - -
Stsc60639g00002 426 MobiDBLite consensus disorder prediction 1 34 - -
Stsc60639g00002 426 SUPERFAMILY Homeodomain-like 231 287 IPR009057 -
Stsc60639g00002 426 MobiDBLite consensus disorder prediction 289 335 - -
Stsc60639g00002 426 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 24 424 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60639g00002 Stsc-Chr60639 15896 22736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60639g00002 215 423 G2-like Transcription Factor Family AT5G16560 59.817 1.91e-69 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60639g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60639g00002 - - lja:Lj0g3v0089499.2 342.813