Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60634g00011 ATGGAGTCGTCGTCATCAACAACAACTGCAATAGCATCAACATCATTAACGGCGATACAAAATTCCTTCGACGCCGTTTATTCCCGCTACGCACGCGAGGCGCTCGACGAATTGCCTGATAACTTCACCATCACCGACCCGTCAATCCCAGGCCACCCAATCGTCTTTGCCAGCCAAGGCTTCCTCAAGATGACCGGTTACGACCGGGACGAGGTTGTCGGAAGAGGTGGGGCCATGTTCCAAGGTGAGAGGACTTCTAGAAGGTCGGTGATGGCTGTCAGGGAGGCCGTTAGGAATGAGCGGAGCTGCCAGGTCAGCTTGCTTAACTACCGCAAGGATGGGACACCCTTTTGGATGCTCTTTCATGTCACTCCTGTTTTTGGAAGGGATAGTGGTGGGGTTGTTCACTTTCTGGCGGTTCAGGTTCCTTTGCAAGGGAGGAGGAGGAGGAGGCGGCGCTCTATTGGGTGCCGCAGAGGTAGCGGTGGTGATGACGGTGGCGATTATGTTTTCGGGTGTTGTAGGAAGGAGGTGTGCAATGATAACGGGTTGGAGGTTGAGTTAGTTTCTTCCATGGATCACGGGTTAGACCATGATACTAGAGAATTGGAGAGTGATGAGCCATGTGAGGCAACTGACGATGAGAAGAGAAGCGCAATGGTTGCAATGGACAACATCTTTTCGGTGCTAACTCACTACAGCGAGTCAACAGGCAGATCGGTATGTAGAAAGAGATGCAGCACACCTGACATGGGTCTTCTTAGCACTTCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAGCTAATCCGCATTTACCTGACATGCCCATTGTATATGCCAGTGACGCCTTCTTGAAATTGACAGGATATGCAAAGGACGAAGTTTTGGGCCGCAATTGTAGATTTTTAAGTGGACCGGATACTGATGATTCAACTTTATATCAGATAAGGGAAAGCATTAGAAATCAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAGAAGCTCATTTTGGAACCTTCTCCACATCTCACCTGTACGTGATGCTTCTGGCAAGGTAGCATACTATGTTGGTGTTCAAATAGAAGAGGAGCATAAAAACGAGGATAGGCAAGGCTTGAGCCCTGAGAAGAGGCAGCTTAGTGTTGTTGGTGTGGTGAAGGTTGCTGTGAGGAGTTTATCAATGCATGCTGGACCTTCAAAGTCATAG 1230 0.4805 MESSSSTTTAIASTSLTAIQNSFDAVYSRYAREALDELPDNFTITDPSIPGHPIVFASQGFLKMTGYDRDEVVGRGGAMFQGERTSRRSVMAVREAVRNERSCQVSLLNYRKDGTPFWMLFHVTPVFGRDSGGVVHFLAVQVPLQGRRRRRRRSIGCRRGSGGDDGGDYVFGCCRKEVCNDNGLEVELVSSMDHGLDHDTRELESDEPCEATDDEKRSAMVAMDNIFSVLTHYSESTGRSVCRKRCSTPDMGLLSTSLIISLGRIKQSFVLANPHLPDMPIVYASDAFLKLTGYAKDEVLGRNCRFLSGPDTDDSTLYQIRESIRNQQPCTVRILNYRKDRSSFWNLLHISPVRDASGKVAYYVGVQIEEEHKNEDRQGLSPEKRQLSVVGVVKVAVRSLSMHAGPSKS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60634g00011 409 Gene3D PAS domain 268 404 - -
Stsc60634g00011 409 ProSiteProfiles PAS repeat profile. 281 327 IPR000014 -
Stsc60634g00011 409 Gene3D PAS domain 28 155 - -
Stsc60634g00011 409 PANTHER PROTEIN TWIN LOV 1 15 399 - -
Stsc60634g00011 409 FunFam Protein TWIN LOV 1 isoform D 41 232 - -
Stsc60634g00011 409 CDD PAS 38 140 IPR000014 -
Stsc60634g00011 409 FunFam protein TWIN LOV 1 268 404 - -
Stsc60634g00011 409 Pfam PAS domain 275 367 IPR000014 -
Stsc60634g00011 409 Pfam PAS domain 50 141 IPR000014 -
Stsc60634g00011 409 NCBIfam PAS domain S-box protein 281 367 IPR000014 -
Stsc60634g00011 409 NCBIfam PAS domain S-box protein 53 139 IPR000014 -
Stsc60634g00011 409 SMART pac_2 331 371 IPR001610 -
Stsc60634g00011 409 SMART pac_2 104 147 IPR001610 -
Stsc60634g00011 409 ProSiteProfiles PAC domain profile. 328 382 IPR000700 -
Stsc60634g00011 409 CDD PAS 277 366 IPR000014 -
Stsc60634g00011 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 277 367 IPR035965 -
Stsc60634g00011 409 SMART pas_2 29 102 IPR000014 -
Stsc60634g00011 409 SMART pas_2 256 329 IPR000014 -
Stsc60634g00011 409 ProSiteProfiles PAS repeat profile. 27 100 IPR000014 -
Stsc60634g00011 409 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 140 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60634g00011 Stsc-Chr60634 62670 67421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60634g00011 258 400 AGC Kinase Gene Family AT5G58140 43.357 8.69e-39 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60634g00011 - - adu:107489171 691.419