Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60633g00009 ATGGAAATCTTCACACAGAAGGAATTGCCAACTTGTTTGCAAGAAATGGCAATGGAATCAAAGTTTTTGGACAACAACAATGCAACTATAAGAAGTTCTCATCACTCTCTTACTACTTCTCATCATGTTCATGCAAACTTTTCAATGGCATCATCACCTGAAAGGCTTCTTTCATGTTCACATTCAATGAAAGAAGAAGAGGTGGTAGTGCCCTATGATGCCACTTTGATTGGCCATGTCCCTTCAAATTTCCATGGCCATGAAGACATAAGAAATGGGCAAGAGAAAAACCATACCTTTCAAAGATTCAACAATAACCCTCTGAATCTTTTGGAGACTCTGCCAGCATTAACCATAGCATCTTCTTCTTCTGATGACTCACCTCCTTCTCTGCCTTCTCCTCCTCCTCCTTCTTCTTCTTCTTCACACAAATTTCCAAACTTGACATTGTTCTTGCAGGAACCTTCCATGCTCTACTCATCATCCTCACAGCTAAAAAGTGGCCAAACTCAGCACCAAACAACCACTGATCCTCACAAAATCACCAAGAATCTATCAAACATGAGGAGGTCCAAGTCTTTCAATGATCACCAGAATTGGTTGAGCACAAGGACTCAGCCTTTTAAGTGCTGCGGCGGAGGCAGAAGAGTCAACCACAACAACAACAACAACAACAGGCTTTTCAAAGGGGTGAGGCAGAGACACTGGGGAAAATGGGTTGCTGAGATAAGATTACCAAGAAACAGGAAAAGGGTGTGGTTAGGGACATTTGATACAGCTGAAGATGCAGCCATTGCATATGATACTGCAGCATATATACTTAGAGGGGATTATGCACAGTTGAATTTCCCTGAATTGAAGCATGTGATCAAGGCCAATTCTCTGAATGGAACCATTTCAGCACTCGTTGAGGCAAAACTACAAACAGTTCATCTGCAGAAAAAGAATCCTGACAAAAACAACAACAATTATGATGATGATTCACCACCATCAGCAGTTTCAGCATGCAAAAATAAGGATTCATCATCAAGCACAATGGAGTTGCAGTTTGATTCTAATGAGAGAAGCAACAAAAGTGGTTCAATTTCACTTCACCATGATCATCATCATCAGGTCTTGGATGTGGAAGGTGTTCAATTGAGCAGAATGCCATCATTGGATATGGATCTTATTTGGGATGCACTTTTAGTCTCTGATTCATGA 1203 0.4098 MEIFTQKELPTCLQEMAMESKFLDNNNATIRSSHHSLTTSHHVHANFSMASSPERLLSCSHSMKEEEVVVPYDATLIGHVPSNFHGHEDIRNGQEKNHTFQRFNNNPLNLLETLPALTIASSSSDDSPPSLPSPPPPSSSSSHKFPNLTLFLQEPSMLYSSSSQLKSGQTQHQTTTDPHKITKNLSNMRRSKSFNDHQNWLSTRTQPFKCCGGGRRVNHNNNNNNRLFKGVRQRHWGKWVAEIRLPRNRKRVWLGTFDTAEDAAIAYDTAAYILRGDYAQLNFPELKHVIKANSLNGTISALVEAKLQTVHLQKKNPDKNNNNYDDDSPPSAVSACKNKDSSSSTMELQFDSNERSNKSGSISLHHDHHHQVLDVEGVQLSRMPSLDMDLIWDALLVSDS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60633g00009 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 86 395 - -
Stsc60633g00009 400 MobiDBLite consensus disorder prediction 120 145 - -
Stsc60633g00009 400 MobiDBLite consensus disorder prediction 323 359 - -
Stsc60633g00009 400 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
Stsc60633g00009 400 SUPERFAMILY DNA-binding domain 227 284 IPR016177 GO:0003677
Stsc60633g00009 400 Gene3D AP2/ERF domain 227 285 IPR036955 GO:0003700|GO:0006355
Stsc60633g00009 400 CDD AP2 228 286 IPR001471 GO:0003700|GO:0006355
Stsc60633g00009 400 MobiDBLite consensus disorder prediction 313 362 - -
Stsc60633g00009 400 Pfam AP2 domain 228 275 IPR001471 GO:0003700|GO:0006355
Stsc60633g00009 400 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Stsc60633g00009 400 FunFam Ethylene-responsive transcription factor 2 226 285 - -
Stsc60633g00009 400 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Stsc60633g00009 400 PRINTS Ethylene responsive element binding protein signature 250 266 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60633g00009 Stsc-Chr60633 54840 56098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60633g00009 107 395 AP2-EREBP Transcription Factor Family AT4G13620 42.105 2.27e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc60633g00009 AP2 1.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60633g00009 - - aip:107616692 533.487