Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60633g00001 ATGGCAGAGAAGACGTGCGTGGTTTGTGATGAAAACAAGGAAGTTTGTTCGAATGAATGCATCTACGAACCACTCTTCCCCGCTGAGGACGACCAGAAGAAACGCGACTATTTCACAATTAAGGCACATTTACTTGCACTTGACCTAACAACGTTGCTTCCAAAGCTTCAAACAATGGAGGAGAGAAGAGAAGCCATAAGTGCTCTTCTCTGGCAAGCAAAGGCATGGGAGAAAGACCCGATCCATGGAGCAATGGCTGAGTTCAATGACCTCAAACAGGCATTGAAGGATGTTGAGGAGGGAGAAGACGAACTGAAGAATGCTGAGGAGAGTGATGCTGAAGATGATGATGATGCTGAAGACAATGAGAATCTCATCCAAGAAGATCGAAAGCTTCCTCCAAAGAAGCGAAA 413 0.4552 MAEKTCVVCDENKEVCSNECIYEPLFPAEDDQKKRDYFTIKAHLLALDLTTLLPKLQTMEERREAISALLWQAKAWEKDPIHGAMAEFNDLKQALKDVEEGEDELKNAEESDAEDDDDAEDNENLIQEDRKLPPKKR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60633g00001 137 Coils Coil 88 111 - -
Stsc60633g00001 137 MobiDBLite consensus disorder prediction 103 123 - -
Stsc60633g00001 137 Pfam Lateral organ boundaries (LOB) domain 6 100 IPR004883 -
Stsc60633g00001 137 SUPERFAMILY tRNA-binding arm 29 109 IPR010978 GO:0000166
Stsc60633g00001 137 ProSiteProfiles LOB domain profile. 4 109 IPR004883 -
Stsc60633g00001 137 MobiDBLite consensus disorder prediction 96 137 - -
Stsc60633g00001 137 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60633g00001 Stsc-Chr60633 433 845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60633g00001 1 100 AS2 family AT2G23660 28.000 1.69e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc60633g00001 LOB 9.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60633g00001 - K13945 nnu:104613214 58.9214