Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60630g00008 ATGCAATTCTTTGAGTTTGATCCCAAGATCGGAAGAACAATTACAAAGCACAGAAACAGGTCCAGAACGGCTCTCCAAACCTCTCAAAACTTTAAACTTGTGACATCGCTGCCTCTCCGCAAACGGAAAACGGCGACGCCGTCGCTGCAACGACTCAGAGACCTGAACGCGACGCGCCGGAGACCACCGTATCGGCGACTAGCTAGATGCCGTAACTATTCAAAGCCAGCTGTTGGCCCGAACGAGGAACATCAAGGTACATTGAATGCCATAAGTACCATGACAAATAGGTGTGATGGCCGGAAAGCCTCTAAAGGTCGCCGCTTATCATCATCAGTTGAGGATGCTAGTGGTGAAAGTAACACAGGTGGAGAATATCATTTAAAGAAAGGCCCTTGGACATCAGCAGAGGATGCAATTTTAGTAGAATATGTCAAGAAGCATGGAGAAGGGAATTGGAATGCTGTTCAAAGAAATTCAGGACTTCACCGATGCGGGAAAAGCTGCCGTTTAAGATGGGCAAATCACTTGAGACCAGATTTGAGAAAAGGTGCGTTCACTGAAGAAGAAGAGCGCCAGATCATCGAACTCCATGCTAAGATGGGAAACAAATGGGCACGGATGGCTGCAGAGCTGCCTGGGCGTACAGACAATGAGATAAAGAACTATTGGAACACAAGAATTAAAAGAATGCAGCGAGCTGGTCTACCAATCTACCCTCCTGACATATGCATGCGGGTGATGCATGGCAATCAAGAAAGTTTAAATGTTGGCACCTTGACGGATGGTGGCAATCAGCATGATGATCTCTCACGGACAGATACTATGGCAGAGATACCGCAGTTAGATTTCAAATACTACAAGACCTGTCCAATATCTTATGGATCATCAATGTTTGATGTACCTGAAAGTAGCATGTTTGAAAAGAGTTCGGACTCATCCCAAGGTTACAATATCATCTTTCCTATGATGAATCCTTCAAAGCGCCTTCGGGAATCCGACATGAAATATGGCAATTTGGACAGTTGTATCAGTACTACTGTCCCAATATTTGAACAGTGTGGTGATTACATGTGTGATGAAACTTCCGATCATACTCGGTTGTCTTCTCCATGTGATCCTATTCTAAACACCAGCGATCAGTTTCATGGTGATGATGCATATGGCAGCCATGCCACTTTAAATGGCAATAACTCTTCTTCTTCTGTGCCCATATCAGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTATCTGGGGCACACCTGCTTCCCCACTTCCCTCACTTGAGTCCGTTGACACGTTGATCCAGTCTCCGGTAGCCAAGCCGGCTCCTTCGGATCCCGTTTCTCCAAAGAGCAGTGGTTTGCTGGATGCAATAATCTATCAGCCGAAACGCTCACAAGAGGCGAACAACAATTTACTGCAAGAAACACCCAATGATTGTGTTCGAAATGAAGTAGTCAAGATTTCAACCATGAAGTGTAAGCCGGAATGGGATGAACAAAGGAGGCCGTGTTGTCCCATAGATCAGTCTTCTGCTTCAGGTCTGATCGATTATACTCCCATTAGCATGTGCTTGGTCGATACACTCCAATCAGGCGAAACCATTCAGGATCATAATATTAAGCACGAACTAGGCACGCAGTACCCAGCTTACTTTTCTGGGAAGAAAGATAACATGAATCAAATAGACTTCACAAGGCCTGATGCTTTACTTAACATTGGTTGGTTTGGGAATGTCGTCTATGATGGCGATCTGTCCCTTATAAAAGATCCTTTCGGCACCTTTCTTGGTCAAGATCCCCATGGTTGCTAA 1839 0.4524 MQFFEFDPKIGRTITKHRNRSRTALQTSQNFKLVTSLPLRKRKTATPSLQRLRDLNATRRRPPYRRLARCRNYSKPAVGPNEEHQGTLNAISTMTNRCDGRKASKGRRLSSSVEDASGESNTGGEYHLKKGPWTSAEDAILVEYVKKHGEGNWNAVQRNSGLHRCGKSCRLRWANHLRPDLRKGAFTEEEERQIIELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPDICMRVMHGNQESLNVGTLTDGGNQHDDLSRTDTMAEIPQLDFKYYKTCPISYGSSMFDVPESSMFEKSSDSSQGYNIIFPMMNPSKRLRESDMKYGNLDSCISTTVPIFEQCGDYMCDETSDHTRLSSPCDPILNTSDQFHGDDAYGSHATLNGNNSSSSVPISGAMKLELPSLQYLETQQGIWGTPASPLPSLESVDTLIQSPVAKPAPSDPVSPKSSGLLDAIIYQPKRSQEANNNLLQETPNDCVRNEVVKISTMKCKPEWDEQRRPCCPIDQSSASGLIDYTPISMCLVDTLQSGETIQDHNIKHELGTQYPAYFSGKKDNMNQIDFTRPDALLNIGWFGNVVYDGDLSLIKDPFGTFLGQDPHGC 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60630g00008 612 Pfam Myb-like DNA-binding domain 183 226 IPR001005 -
Stsc60630g00008 612 Pfam Myb-like DNA-binding domain 130 177 IPR001005 -
Stsc60630g00008 612 Gene3D - 185 251 - -
Stsc60630g00008 612 SMART sant 129 179 IPR001005 -
Stsc60630g00008 612 SMART sant 182 230 IPR001005 -
Stsc60630g00008 612 ProSiteProfiles Myb-like domain profile. 178 228 IPR001005 -
Stsc60630g00008 612 MobiDBLite consensus disorder prediction 93 130 - -
Stsc60630g00008 612 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 115 585 - -
Stsc60630g00008 612 CDD SANT 185 226 IPR001005 -
Stsc60630g00008 612 FunFam MYB-related transcription factor 129 182 - -
Stsc60630g00008 612 CDD SANT 132 177 IPR001005 -
Stsc60630g00008 612 ProSiteProfiles Myb-like domain profile. 125 177 IPR001005 -
Stsc60630g00008 612 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 177 IPR017930 -
Stsc60630g00008 612 FunFam Transcription factor GAMYB 185 231 - -
Stsc60630g00008 612 Gene3D - 129 182 - -
Stsc60630g00008 612 SUPERFAMILY Homeodomain-like 127 224 IPR009057 -
Stsc60630g00008 612 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 178 232 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60630g00008 Stsc-Chr60630 59413 66578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60630g00008 126 608 MYB Transcription Factor Family AT5G06100 37.952 1.11e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc60630g00008 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60630g00008 K09422 - gmx:100800658 618.616