Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60628g00007 ATGAAGGACTTATTGGTGGATTCACCAGTTTGTGTTCTTGAGGATCTACTAAGAACCTCAGAATCAGAATCAAGCTCTTCTTCTTCTTCCAAAGAGCACACTTTGGATTCTGAGTCTCATCATCAAGATAAGCCAAGACATGTTTCTAAGTGGCACACTTTTGTGCAATTGTTGAGGAACAAGTCAAAGAAGCCTTTGGCCACATTGCATCCTCTTAGTGTCCTCAAGCTCTCTAGAAGAATGAGTGGTAGCATGAGGGAGACTTCACTTGCTACCATGGATTCAGATTCTTCATTATTGCACACCTCACCCTGGAAGATCTTCTCTCTCCATGACTTGCAAATTGCCACCAAATATTTCAGCCAAGAGAATTTGATTGGGAAGGGTGGTTATGCTGAGGTTTACAAAGGGTGTTTGCCAAATCATCAGCTAGTAGCAATTAAAAGGCTAACAAGAGGAACAGCTGATGAAACTATAGGTGACTTCTTATCAGAACTTGGAATCATGGCCCATGTAAACCACACCAACACTGCTAAGTTGGTTGGTTATGGTGTGGAAGGTGGAATGCATCTGGTTCTTGAGTTGTCTGAAAAAGGAAGCCTAGCTTCAGTGCTTTATGGGTCCAAGGAGAAGCTTTCCTGGTCTATTAGGCAGAGGATTGCATTAGGAACTGCAGAGGGAATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCTGCAAATATCTTACTCACTGATGAATATGAGCCTCAGATTTGTGATTTTGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCACCACAGCGTTACAAGATTTGAAGGAACTTTTGGATACCTTGCTCCAGAATACTTGCTCCATGGCATAGTAGATGAGAAAACAGATGTATTTGCATTTGGTGTAGTGCTCTTAGAATTAGTAACTGGAAGGAGAGCACTTGATTACTCACAACAAAGCCTTGTCTTATGGGCAAAACCTTTGTTGAAGAAGAATAATATTAGGGAGCTGATTGATCCTTCACTAGGAGGTGACTTTGATTATAGAGAGGTTAATGTTATGCTCTTGGCAGCTTCTTTATGCATACAACAATCTTCCATTCGTCGTCCCTCTATGAGACAGATTGTGCAGCTTCTGAAAGGGAATCTTAGCTGCTTCAAGTTTGCAAAGAAATCTCGAGTTCCATTCTTCACAAGAGCCTTTCAAGACGAGTTTCTTGAATCAGATTAG 1248 0.4103 MKDLLVDSPVCVLEDLLRTSESESSSSSSSKEHTLDSESHHQDKPRHVSKWHTFVQLLRNKSKKPLATLHPLSVLKLSRRMSGSMRETSLATMDSDSSLLHTSPWKIFSLHDLQIATKYFSQENLIGKGGYAEVYKGCLPNHQLVAIKRLTRGTADETIGDFLSELGIMAHVNHTNTAKLVGYGVEGGMHLVLELSEKGSLASVLYGSKEKLSWSIRQRIALGTAEGILYLHEGCQRRIIHRDIKAANILLTDEYEPQICDFGLAKWLPENWTHHSVTRFEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDYSQQSLVLWAKPLLKKNNIRELIDPSLGGDFDYREVNVMLLAASLCIQQSSIRRPSMRQIVQLLKGNLSCFKFAKKSRVPFFTRAFQDEFLESD 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60628g00007 415 ProSiteProfiles Protein kinase domain profile. 120 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60628g00007 415 MobiDBLite consensus disorder prediction 33 47 - -
Stsc60628g00007 415 MobiDBLite consensus disorder prediction 18 47 - -
Stsc60628g00007 415 MobiDBLite consensus disorder prediction 18 32 - -
Stsc60628g00007 415 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 197 399 - -
Stsc60628g00007 415 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 90 194 - -
Stsc60628g00007 415 PANTHER OS08G0249100 PROTEIN 7 407 IPR046958 -
Stsc60628g00007 415 SUPERFAMILY Protein kinase-like (PK-like) 95 385 IPR011009 -
Stsc60628g00007 415 ProSitePatterns Protein kinases ATP-binding region signature. 126 148 IPR017441 GO:0005524
Stsc60628g00007 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Stsc60628g00007 415 Gene3D Transferase(Phosphotransferase) domain 1 197 399 - -
Stsc60628g00007 415 Gene3D Phosphorylase Kinase; domain 1 80 194 - -
Stsc60628g00007 415 SMART serkin_6 120 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60628g00007 415 Pfam Protein kinase domain 121 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60628g00007 Stsc-Chr60628 31390 33904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60628g00007 108 387 Receptor kinase-like Gene Family AT1G53420 43.056 4.49e-70 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60628g00007 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60628g00007 - - gmx:100780587 623.624