Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60627g00010 ATGATGATGATGATTGAAAAGGAAGATTTGGGTTTGAGTTTAAGCCTAAACTTGTTCCCTACTTCAAATCCACACCATCTTTCTTCTTCTTCTTCTTCTTCTGGTGGTGCTTGCATTATTACTTCCATGGATGGGAAGTCGGAAGCTAGACCGTTGTTTGGAATCGACGTGAACCGGGCGGAGGCAGAGGAGGATGAAGCGGCGGCGTTGTCGTCGCCGAACAGCACGGTGTCAAGCGTTAGCGGCAGGAAGAGGAACGAAAGAGAAGACGGAGAAGATGAAGACGCAGAAACGTCCAGGAAGAAGCTCAGGCTCTCCAAGGACCAATCTGCAATTCTTGAGGACACCTTCAAAGACCACAATACTCTCAACCCTAAGCAAAAGTTGGCACTGGCAAAGCAGCTTGGGCTTAGACCAAGACAAGTTGAGGTCTGGTTCCAGAACAGAAGGGCTAGGACGAAGCTGAAACAGACAGAGGTGGATTGCGAGGTTTTGAAGAGGTGCTGTGAGAATCTGACGGAGGAGAATAGGAAGCTACAGAGAGAGGTTCAGGAGCTTAGAGCACTGAAACTTTCCCCTAACTTGTACATGCAAATGACACCACCCACCACTCTCACCATGTGCCCTTCTTGCGAGCGCTTCGCCGTTCCCTCCGATTCTGCCACACCTGCCCGTCATCATCTCAAGGCCCAGGCCCAAATTCGGCCCATATTAGGCCCATTAGCTTCTTCGGCTCCCGTCTTGCACCGGCCCTTGGATGCATTCCGTCATTGA 774 0.5078 MMMMIEKEDLGLSLSLNLFPTSNPHHLSSSSSSSGGACIITSMDGKSEARPLFGIDVNRAEAEEDEAAALSSPNSTVSSVSGRKRNEREDGEDEDAETSRKKLRLSKDQSAILEDTFKDHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRKLQREVQELRALKLSPNLYMQMTPPTTLTMCPSCERFAVPSDSATPARHHLKAQAQIRPILGPLASSAPVLHRPLDAFRH 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60627g00010 257 Pfam HD-ZIP protein N terminus 4 89 IPR006712 GO:0005634
Stsc60627g00010 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 10 229 - -
Stsc60627g00010 257 Pfam Homeodomain 100 154 IPR001356 GO:0003677
Stsc60627g00010 257 Pfam Homeobox associated leucine zipper 156 190 IPR003106 GO:0006355|GO:0043565
Stsc60627g00010 257 Coils Coil 155 192 - -
Stsc60627g00010 257 CDD homeodomain 100 157 IPR001356 GO:0003677
Stsc60627g00010 257 MobiDBLite consensus disorder prediction 82 105 - -
Stsc60627g00010 257 Gene3D - 104 154 - -
Stsc60627g00010 257 PRINTS Lambda-repressor HTH signature 127 136 IPR000047 GO:0003677
Stsc60627g00010 257 PRINTS Lambda-repressor HTH signature 136 152 IPR000047 GO:0003677
Stsc60627g00010 257 FunFam Homeobox-leucine zipper protein HAT22 104 150 - -
Stsc60627g00010 257 ProSitePatterns 'Homeobox' domain signature. 131 154 IPR017970 GO:0000981|GO:0006355
Stsc60627g00010 257 SMART halz 156 199 IPR003106 GO:0006355|GO:0043565
Stsc60627g00010 257 ProSiteProfiles 'Homeobox' domain profile. 96 156 IPR001356 GO:0003677
Stsc60627g00010 257 SMART HOX_1 98 160 IPR001356 GO:0003677
Stsc60627g00010 257 MobiDBLite consensus disorder prediction 64 105 - -
Stsc60627g00010 257 SUPERFAMILY Homeodomain-like 93 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60627g00010 Stsc-Chr60627 61787 63049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60627g00010 3 251 Homeobox Transcription Factor Family AT4G17460 52.778 8.36e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60627g00010 HD-ZIP_N 1.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60627g00010 K09338 - gmx:100813367 304.679