Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60627g00004 ATGCGTATAGAAGAATTGAAGAGTGGTGGTGAGGTGGAAGGGAATGGAGAGGAAGAGAGGTCATCAAGCTTTCTGGGCTATGATGCAAAGAAGGTTTTGGTTGGAGCCGGGGCTCGCGCGCTTTTCTATCCCACACTGCTTTACAATGTTGTAAGGAACAAAATTCAGTCTGAATTTCGGTGGTGGGATAAGGTTGATGAGTTCATATTATTAGGTGCTGTTCCATTTCCAATTGATGTTCCCCGTCTGAAGGAGCTTGGTGTCCGTGGGGTTGTCACACTGAATGAGTCATATGAGACTTTGGTTCCAACTACTTTATATTATGCCCATGGAATTGACCATCTAGTGATTCCTACAAGAGATTACTGTTTTGCTCCATCAATGCATGATATATGCCGTGCTGTGGACTTCATACATGAAAATGCATTATCTGGAAGCACTACATATGTCCATTGCAAAGCTGGGCGTGGTCGCAGTACAACTGTTGTTATTTGTTATCTGGTGCACCACAAACTAATGACACCGGAGGGTGCGTATGATTATGTGAAGTCAATTCGGCCGAGGGTCCTTCTAGCTTCGTCTCAGTGGCAAGCTGTTCAGGATTACTACTGCTCCCTCATGGGGACAAGATTTGTTGGACGTTCGCCTTTTGCAGGTCTATTTGTAAAGGCTAAGGTTTCGGAGGCTGCAATAGCTTCAAGAAATCATATGTTGTTTGACGATAATTCTGTAGTTGTGATAACTGAGTCAGATCTTGAAGGATATGATCCAAGCATTCAACTTCAAACTATGCCTAGTGAAATTTGGGCAGATTTAAGTGTGGTGTACCGGGTAGGAGTTGCCGGACGAGCAGCACTTGCAAGAATCTCATGCCTTTGGCTGCGGTGTGGTCCGAACCAGAAGATTTCTACGGAGAAACTTAGCAGTGATGCCAGTTGCTCAATCCGGAGTAATAACAACTTGGGAGGAATTAGTATCGATATCCATGTGTACTGA 996 0.4448 MRIEELKSGGEVEGNGEEERSSSFLGYDAKKVLVGAGARALFYPTLLYNVVRNKIQSEFRWWDKVDEFILLGAVPFPIDVPRLKELGVRGVVTLNESYETLVPTTLYYAHGIDHLVIPTRDYCFAPSMHDICRAVDFIHENALSGSTTYVHCKAGRGRSTTVVICYLVHHKLMTPEGAYDYVKSIRPRVLLASSQWQAVQDYYCSLMGTRFVGRSPFAGLFVKAKVSEAAIASRNHMLFDDNSVVVITESDLEGYDPSIQLQTMPSEIWADLSVVYRVGVAGRAALARISCLWLRCGPNQKISTEKLSSDASCSIRSNNNLGGISIDIHVY 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60627g00004 331 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Stsc60627g00004 331 PANTHER PHOSPHATIDYLINOSITOL PHOSPHATASE 1 294 - -
Stsc60627g00004 331 Pfam Dual specificity phosphatase, catalytic domain 101 202 IPR000340 GO:0008138|GO:0016311
Stsc60627g00004 331 CDD PTPMT1 61 203 IPR044596 GO:0004721
Stsc60627g00004 331 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 53 206 IPR029021 -
Stsc60627g00004 331 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Stsc60627g00004 331 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Stsc60627g00004 331 FunFam Dual specificity phosphatase domain protein 61 207 - -
Stsc60627g00004 331 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
Stsc60627g00004 331 Gene3D Protein tyrosine phosphatase superfamily 61 207 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60627g00004 Stsc-Chr60627 27659 31692 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60627g00004 30 331 Protein tyrosine phosphatase (PTP) family AT2G35680 60.129 2.94e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60627g00004 - - adu:107485250 601.282