Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60625g00017 ATGATTTCAGGAAGATGTGCTGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCTGATTGCATTTTCTCTCCATATTTTCCTGCCAATGACCCTCAAAGATTTGCTTGTGTACACAAAATCTATGGTGGCAGCAATGTTGGAAAAATGCTTCAGGAAATCCCACCCTATCTAAGACAAGAAGCTGCAGATACATTGTATTTAGAAGCAAAATGTAGGATTGATGATCCTATTTATGGGTGTGTTGGCATTATCTCATCATTGTATGAACAAATTCAAAATGCAGAAATTGAGTTAGCAAAAATCCAAACTCAGATTGCTTTCTACAAGCTCCAAACACAACAACAGGTTGAAGCTGAACCAAACATGGAGGTTTTGCTATCACAAAGCAGTAATATGGGGCAGTTTGAGTGGGACAATCCAACTATTGCTTCTTGGTTCAATTGA 444 0.3806 MISGRCAACKNQRRKCPSDCIFSPYFPANDPQRFACVHKIYGGSNVGKMLQEIPPYLRQEAADTLYLEAKCRIDDPIYGCVGIISSLYEQIQNAEIELAKIQTQIAFYKLQTQQQVEAEPNMEVLLSQSSNMGQFEWDNPTIASWFN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60625g00017 147 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Stsc60625g00017 147 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 123 - -
Stsc60625g00017 147 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Stsc60625g00017 147 Coils Coil 84 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60625g00017 Stsc-Chr60625 69362 70102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60625g00017 1 114 AS2 family AT3G26660 60.526 3.88e-49 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc60625g00017 LOB 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60625g00017 - - gmx:100790640 206.838