Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60624g00004 ATGGAGGACGCTATCAACCAACTTTATGCTTCACCCATCACACCTCTCCTCCATACTAATCAAACCCTTCTTCACCCTCCTCTCTACCTTCATCAACCCTTCTTGGAAGCCGTGACAGACAAGGAAGACAACATTTTCGGGGTTGATGATGAAGATTTTGATTCTTGCTTGCAGCAGCAGCAAGGTAGTAACAAGAAGAGGAGGCTGAGAAGCGAGCAAGTTCAGTTTCTGGAGAAGAGCTTCGAGGTGGAGAACAAGCTTGAACCTGAAAGGAAGTTGCAAATTGCAAAAGAGATTGGCTTGCATCCAAGGCAAGTTGCCATCTGGTTCCAGAATAGAAGAGCAAGGTTCAAGACCAAGCGGATTGAGAAAGACTTTGCTGCATTGAAACAAAGCTTTGATTCCCTTCAACAACAATATGATCTTCTTCTTCGTGACAATCACACCTTACAAGAACAGGTTGATTCATTGAAGAAGAGAGTAATTCCTAGAGAAGAAGAAGAAAATATAGAGGAGATGGGTGTGAATAATATGATCTCCAAAGTAGTGGAAGATGCCACAACCACCACCAATTCATCATCAAAAAGTGATGTGCTTGATTCTGATAGCCCAAACTACACTGATGGAAACCATTCCTCCTCATCTCATCATGATGATTTCTCTTCTCATCATCATAACAATAATCTGTTGAAAACCCTATCTTTCTTACCAAAGGTTGAAGATGATGATGATGGCAACACTTGCAATTTTGGGTTCAATGTTGTTGAAGACCAAGCCTTTGATTTTTGGTCTTACTGA 798 0.4135 MEDAINQLYASPITPLLHTNQTLLHPPLYLHQPFLEAVTDKEDNIFGVDDEDFDSCLQQQQGSNKKRRLRSEQVQFLEKSFEVENKLEPERKLQIAKEIGLHPRQVAIWFQNRRARFKTKRIEKDFAALKQSFDSLQQQYDLLLRDNHTLQEQVDSLKKRVIPREEEENIEEMGVNNMISKVVEDATTTTNSSSKSDVLDSDSPNYTDGNHSSSSHHDDFSSHHHNNNLLKTLSFLPKVEDDDDGNTCNFGFNVVEDQAFDFWSY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60624g00004 265 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Stsc60624g00004 265 Gene3D - 57 126 - -
Stsc60624g00004 265 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677
Stsc60624g00004 265 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677
Stsc60624g00004 265 Coils Coil 119 160 - -
Stsc60624g00004 265 SMART HOX_1 63 124 IPR001356 GO:0003677
Stsc60624g00004 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 59 216 IPR045224 GO:0003700
Stsc60624g00004 265 MobiDBLite consensus disorder prediction 186 211 - -
Stsc60624g00004 265 SUPERFAMILY Homeodomain-like 54 120 IPR009057 -
Stsc60624g00004 265 MobiDBLite consensus disorder prediction 186 223 - -
Stsc60624g00004 265 Pfam Homeobox associated leucine zipper 120 160 IPR003106 GO:0006355|GO:0043565
Stsc60624g00004 265 Pfam Homeodomain 65 118 IPR001356 GO:0003677
Stsc60624g00004 265 CDD homeodomain 65 121 IPR001356 GO:0003677
Stsc60624g00004 265 FunFam homeobox-leucine zipper protein ATHB-6-like 68 114 - -
Stsc60624g00004 265 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60624g00004 Stsc-Chr60624 19775 21064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60624g00004 65 208 Homeobox Transcription Factor Family AT3G01470 47.368 7.45e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60624g00004 Homeodomain 7.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60624g00004 - K09338 qsa:O6P43_025407 187.578