Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60621g00011 ATGTCTCACCCAACAACACAACCACCTATGCTCCCTTTCTTCAACCAATCCATGGAACTCGTCCAACTCCCCAACCCAACCCGAACCCGAACCAGAACCGGGTTCTCCCCCACCCTCGGCGAGCTCCTCAAACACGTAGAAGATGCTCAAAACGACAACCCTAACGCACCAACACAACATGTTCTTGATCTCAATTCATCTCCTAACTCCTCTCACCCCTTTCTTCTCTCCTTCACCAACTTAACCTACTGTGTCAAGGTCCGTCGCAAGATGACCCCTCCATGCTTCCCCTCAAACAATGACTCCTTGCCGGAGAACCACGCCACGGACGTGAAAACCGACAACACCGCCACCAAGATTCTACTAAATGATATCTCCGGTGAGGCGAGGGACGGCGAGATCATGGCAGTACTCGGAGCCAGTGGCTCCGGGAAGTCTACCTTGATTGACGCACTCGCCGACCGGATCTCTAAGGAGAGCCTCAAGGGAAGTATAACGCTAAACGGCGACGTTTTGGAGTCCAGGCTGTTGAAGGTTATCTCTGCTTACGTCATGCAGGACGACCTTCTCTTCCCCATGCTCACCGTAGAGGAAACCCTAATGTTCTCCGCCGAGTTCCGCCTCCCTCGCTCCCTATCCAGGTCCAAGAAGAAGGCACGCGTTCAGGCCCTCATCGACCAGCTCGGACTCCGCAACGCCGCCACCACCGTAATCGGCGACGAAGGCCACCGCGGCGTCTCCGGCGGTGAGCGCCGACGCGTCTCGATAGGGATAGACATCATCCACGATCCAATCGTTCTCTTCCTCGACGAGCCAACCTCCGGCCTTGACTCCACCAGCGCGTTCATGGTGGTGAAGGTGCTTCAGCGAATCGCACAGAGCGGGAGCATCGTAATCANNNNNNNNNNAAGCTACCGTATCCTCGGCCTCCTCGACCGCCTAATCTTCCTCTCCCACGGCCAAACCGTGTTCAGCGGCTCTCCGGCGTGCCTCCCGCCGTTCTTCTCAGAATTCGGCCACCCCATACCGGAGAACGAGAACCGCACGGAGTTCGCTCTTGACTTAATCCGCGAGCTGGAAGAAGCTCCCGGCGGTACAAAAGGCCTTGTGGAGTTCAACAAACAGTGGCAGCTCAAGAACAAGCGAATTTCCGAAAAAACCCTCAGCGGAATACCGAAAGTGTCCCTGAAGGACGCAATCAGCGCAAGCATTTCCAGGGGCAAACTCGTCTCAGGGGCGCCAGTTGGCACAAGCAACAGTAACGACTCCAACAAACTCTCAACGGCATCATCATTCCCCACGTTCGCGAACCCGTTCTGGATCGAGATGGCGGTTATAGCAAAACGGTCTCTAACTAACTCACGAAGGATGCCCGAATTATTCGGGATCCGCTTGGGTGCAGTTCTGGTAACCGGTGCCATCCTCGCCACCATGTTTTACCACCTCGATAACTCCCCCAAGGGCGTTCAAGAGCGGTTAGGGTTCTTCGCATTCGCCATGTCCACCACCTTCTACACCTGCGCCGAAGCCATCCCTGTCTTCCTCCAAGAACGCTATATCTTCATGAGAGAAACGGCCTACAACGCCTACCGCCGCTCCTCCTACGTCCTCGCTCACTCCATCATCTCTCTCCCTTCTTTAGTCTTCCTCTCCTTAGCCTTCGCCGCCACCACCTTCTGGGCGGTTGGACTCGCCGGCGGCACCAGCGGCTTCCTCTTCTACTTCCTCACCATCGTGGCCTGCTTCTGGGCGGGTAGCTCCTTCGTGACGTTCCTCTCCGGCGTGGTTTCCCACGTGATGCTTGGGTTCACGGTGGTGGTTGCGATTCTAGCGTACTTTTTACTCTTCAGTGGATTCTTCATCAGCAGGGACAGAATCCCGCCGTACTGGATATGGTTCCATTACATATCTCTGGTGAAGTACCCTTACGAGGGAGTTTTGCAGAATGAGTTCGATCTGAATCCGCCGAGGTGCTTTGTTAGAGGGACGCAGATGTTCGACAGCACGCCGTTGATGGCGGTGCCGGAGGCGTTGAAAGTTGAGCTGCTGAAGAGTATGAGCAAGACGCTGGGGATTAACATCACGAGTTCCACGTGCGTGATTACCGGAGCAGATGTGCTGAAGCAGCAGGGCGTGACACAGCTGAGCAAGTGGAACTGCCTTTGGATAACGCTCGCTTGGGGTTTCTTCTTCCGTTTCCTTTTCTACTTGACTCTTCTCTTTGGGAGCAAGAATAAGCGACGCTGA 2247 0.5501 MSHPTTQPPMLPFFNQSMELVQLPNPTRTRTRTGFSPTLGELLKHVEDAQNDNPNAPTQHVLDLNSSPNSSHPFLLSFTNLTYCVKVRRKMTPPCFPSNNDSLPENHATDVKTDNTATKILLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGSITLNGDVLESRLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSRSKKKARVQALIDQLGLRNAATTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIXXXXSYRILGLLDRLIFLSHGQTVFSGSPACLPPFFSEFGHPIPENENRTEFALDLIRELEEAPGGTKGLVEFNKQWQLKNKRISEKTLSGIPKVSLKDAISASISRGKLVSGAPVGTSNSNDSNKLSTASSFPTFANPFWIEMAVIAKRSLTNSRRMPELFGIRLGAVLVTGAILATMFYHLDNSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPSLVFLSLAFAATTFWAVGLAGGTSGFLFYFLTIVACFWAGSSFVTFLSGVVSHVMLGFTVVVAILAYFLLFSGFFISRDRIPPYWIWFHYISLVKYPYEGVLQNEFDLNPPRCFVRGTQMFDSTPLMAVPEALKVELLKSMSKTLGINITSSTCVITGADVLKQQGVTQLSKWNCLWITLAWGFFFRFLFYLTLLFGSKNKRR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60621g00011 748 FunFam ABC transporter G family member 6 111 335 - -
Stsc60621g00011 748 Gene3D - 108 332 IPR027417 -
Stsc60621g00011 748 SMART AAA_5 131 344 IPR003593 GO:0016887
Stsc60621g00011 748 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524|GO:0016887
Stsc60621g00011 748 Pfam ABC-2 type transporter 445 651 IPR013525 GO:0016020|GO:0140359
Stsc60621g00011 748 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 106 344 IPR003439 GO:0005524
Stsc60621g00011 748 Pfam ABC transporter 122 274 IPR003439 GO:0005524
Stsc60621g00011 748 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 61 736 - -
Stsc60621g00011 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 119 331 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60621g00011 Stsc-Chr60621 67419 70007 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60621g00011 121 299 Calmodulin-binding Proteins AT2G36910 29.348 4.99e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60621g00011 K05681 - gmx:100781319 1124.38