Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60621g00010 ATGGGGAAGGGAGGCCAAGATTATGGGAGGCAAGAGAAGGAGAAGAAGAGTTCTGATGATTCTTCCGATCGCGACACGTTCAAGGCGTGGGCAAGGGACGTGCGAGAGTGCGAGGAGCACTTCAAGGTCAGCGTCAAAACTGGATTGAGCAGTGAAGAGGTTGAGAATCGGAGACGGATCTATGGCTCCAACGAGCTCGAGAAGCATGAGGGTCAATCCATCTGGAGTTTGGTCCTGGAGCAGTTCAACGACACCTTGGTTCGGATCCTCCTCGGCGCCGCCATAATTTCCTTCGTGCTCGCCTGGTACGACGGCGAGCATGACGGCGAGAAGGATATCACGGCCTTCGTGGAGCCTCTGGTCATCTTCTTGATTCTGATTGTGAACGCTGTGGTTGGGGTTTGGCAAGAGAGCAACGCGGAGAAGGCTCTAGAAGCCTTGAAGGAGATCCAATCGGAGCACGCCGCTGTCATCCGTGACAACAAGAAAATAGCTAGCTTGGCGGCGAAGGATCTTGTTCCGGGTGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCCGCGGATATGAGGGTTGTTGAATTGATCAGTTCTACTCTGAGGTTGGAGCAGGGATCTTTGACCGGGGAGAGTGAAGCAGTGAACAAGAGCAACAAGCCTGTGGCCGAGGATTCTGATATCCAAGGCAAGAGGTGCATGGTTTTTGCTGGAACGACTGTTGTTAATGGGAATTGCATCTGCTTGGTTACTCAGATCGGCATGGAGACTGAGATTGGGAAGGTGCATCAGCAGATACACGTGGCCTCGCAGAGTGAGGAGGATACTCCCTTGAAGAAGAAGCTCAATGAGTTTGGAGAGACACTGACTATGATAATTGGGTTGATTTGTATTCTGGTTTGGCTCATCAATGTTAAGTACTTCCTTTCCTGGGAATACGTGGATGGATGGCCCAAGAATTTCAAGTTCTCATTTGAGAAGTGTACCTATTACTTTGAGATTGCTGTGGCATTGGCTGTTGCTGCTATTCCAGAAGGTTTGCCCGCGGTCATCACAACTTGTTTGGCTTTGGGCACTCGCAAGATGGCGCAGAAGAATGCCCTGGTTCGGAAGCTGCCTAGTGTGGAAACTCTGGGTTGTACAACTGTGATTTGTTCGGATAAGACTGGTACATTGACTACTAACCAGATGTCAGTGACTAAACTAGTAGCTATTGGCCATAATATAGACACATTGCGAGCATTCAAAGTGGATGGAACTACCTACAATCCAGCAGGTGGTAAAATAGAGAACTGGCCGGCTGGTGATATGGATGCTAATCTTCAGATGATAGCGAAAGTAGCTGCCATCTGTAATGATGCTGGTGTCACACAGGCTGATAATAAATTTGTTGCTCATGGAATGCCTACAGAAGCGGCCTTGAAGGTTATGGTAGAAAAGATGGGCCTTCCTAAAGGATCCAAGGATGTAAACTCAGCAAGTACAAGTAGCTTATTACGTTGTTGTGAATGGTGGTCTCAACGTGAACGGCGGATTGCCACCCTTGAGTTTGACCGTGATAGAAAATCAATGGGTGTTATTGTAGACTCCAGCGAAAGGAAGAAGTCTCTTCTGGTTAAGGGTGCAGTGGAAAATGTGTTGGAAAGAAGCTCTAAAATTCAGCTGCGTGACGGTTCTGTTGTGAAACTGGATGCTAATGCTAGGAAGCTTGTATTGCAAGCTCTTCATGAAATGTCAACTAGTGCTTTGCGTTGTTTGGGATTTGCATACAAAGATGAGCTACGTGAATTTGAAACTTACAGTGGTAATGATGATCATCCAGCTCACCAGCTCTTGCTTAATCCTTCCAACTATCCATCAATTGAAAGTGAACTTATTTTTGTTGGATTGGTTGGGTTGAGGGATCCACCTAGGGAAGAGGTGCACCAAGCCATCGAAGACTGCAGAGCAGCAGGAATACGTGTCATGGTTATTACTGGAGACAACAAGAACACTGCAGAAGCTATATGCCGTGAAATAGGTGTATTTAGATCCAATGAAGACCTTAGTTCAAAAAGTTTAACTGGGAAAGATTTCATGGAACTGCGCGATAAAAAAGCTCATCTGAGACAGGATGGTGGGCTCTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGACGGTGAGGTGGTGGCCATGACTGGAGATGGTGTTAATGATGCTCCTGCATTGAAGCTTGCTGACATTGGTGTTGCTATGGGTATTACAGGAACAGAGGTTGCAAAGGAAGCTTCTGATATGGTGTTGGCAGATGATAACTTTAGTACCATTGTTGCTGCTGTTGGAGAGGCTGCATTAGGTATTCCTGAAGGACTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTGACCGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCTGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTGATTAACATGTGGATCTTATTCCGCTATCTGGTAATTGGAATGTACGTTGGAATAGCTACAGTTGGTGTCTTCATCATATGGTATACTTGTGGGTCTTTCATGGGCATTGATCTTTCCCAGGATGGACATACTCTAGTCACTTACTCCCAGCTTGCCAATTGGGGTCAATGCCCCACTTGGACCAACTTCACTGCTTCCCCCTTCACTGCTGGTAACTCAGTTGTCACCTTTGATACCCCCTGCGATTATTTCCGTACTGGCAAGGTGAAAGCTATGACACTATCACTCTCGGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCTCTTTCTGAGGATGGAAGCCTTTTGTCAATGCCTCCGTGGGTCAACCCGTGGCTACTCTTGGCAATGTCTGTATCATTTGGTTTGCACTTTTTGATCTTGTACGTGCCATTCTTGGCCAAAGTATTTGGTATTGTGCCCCTGAGCTTGAATGAGTGGCTTTTGGTTTTGGCTGTCGCATTTCCCGTCATTATAATCGACGAGATTCTGAAATTAATTGGGAGGTGTACAAGTCAAACATCAGCCGCAAGTAAATCAAAGCAAAAATCAGAGTAG 3102 0.4662 MGKGGQDYGRQEKEKKSSDDSSDRDTFKAWARDVRECEEHFKVSVKTGLSSEEVENRRRIYGSNELEKHEGQSIWSLVLEQFNDTLVRILLGAAIISFVLAWYDGEHDGEKDITAFVEPLVIFLILIVNAVVGVWQESNAEKALEALKEIQSEHAAVIRDNKKIASLAAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKSNKPVAEDSDIQGKRCMVFAGTTVVNGNCICLVTQIGMETEIGKVHQQIHVASQSEEDTPLKKKLNEFGETLTMIIGLICILVWLINVKYFLSWEYVDGWPKNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGHNIDTLRAFKVDGTTYNPAGGKIENWPAGDMDANLQMIAKVAAICNDAGVTQADNKFVAHGMPTEAALKVMVEKMGLPKGSKDVNSASTSSLLRCCEWWSQRERRIATLEFDRDRKSMGVIVDSSERKKSLLVKGAVENVLERSSKIQLRDGSVVKLDANARKLVLQALHEMSTSALRCLGFAYKDELREFETYSGNDDHPAHQLLLNPSNYPSIESELIFVGLVGLRDPPREEVHQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFRSNEDLSSKSLTGKDFMELRDKKAHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGVAMGITGTEVAKEASDMVLADDNFSTIVAAVGEAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINMWILFRYLVIGMYVGIATVGVFIIWYTCGSFMGIDLSQDGHTLVTYSQLANWGQCPTWTNFTASPFTAGNSVVTFDTPCDYFRTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLSMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKVFGIVPLSLNEWLLVLAVAFPVIIIDEILKLIGRCTSQTSAASKSKQKSE 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60621g00010 1033 Gene3D - 394 632 IPR023299 GO:0000166
Stsc60621g00010 1033 SFLD p-type atpase 365 783 IPR044492 -
Stsc60621g00010 1033 SUPERFAMILY Calcium ATPase, transduction domain A 154 263 IPR008250 -
Stsc60621g00010 1033 SUPERFAMILY HAD-like 620 781 IPR036412 -
Stsc60621g00010 1033 PANTHER CALCIUM-TRANSPORTING ATPASE 30 1024 - -
Stsc60621g00010 1033 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 238 410 - -
Stsc60621g00010 1033 Gene3D - 80 170 - -
Stsc60621g00010 1033 Pfam haloacid dehalogenase-like hydrolase 381 748 - -
Stsc60621g00010 1033 SFLD C1.7: P-type atpase like 365 783 - -
Stsc60621g00010 1033 SUPERFAMILY Calcium ATPase, transmembrane domain M 28 1018 IPR023298 -
Stsc60621g00010 1033 SMART Cation_ATPase_N_a_2 28 102 IPR004014 -
Stsc60621g00010 1033 NCBIfam HAD-IC family P-type ATPase 323 405 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60621g00010 1033 NCBIfam HAD-IC family P-type ATPase 708 783 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60621g00010 1033 NCBIfam HAD-IC family P-type ATPase 121 311 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc60621g00010 1033 Gene3D - 784 1024 - -
Stsc60621g00010 1033 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 769 1022 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 203 217 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 384 398 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 628 639 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Stsc60621g00010 1033 PRINTS P-type cation-transporting ATPase superfamily signature 650 660 - -
Stsc60621g00010 1033 Gene3D - 633 783 IPR023214 -
Stsc60621g00010 1033 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60621g00010 1033 Pfam Cation transporting ATPase, C-terminus 790 1015 IPR006068 -
Stsc60621g00010 1033 ProSitePatterns E1-E2 ATPases phosphorylation site. 386 392 IPR018303 -
Stsc60621g00010 1033 Pfam Cation transporter/ATPase, N-terminus 30 97 IPR004014 -
Stsc60621g00010 1033 Gene3D - 222 388 - -
Stsc60621g00010 1033 FunFam Calcium-transporting P-type ATPase, putative 630 779 - -
Stsc60621g00010 1033 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 394 635 - -
Stsc60621g00010 1033 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 391 632 IPR023299 GO:0000166
Stsc60621g00010 1033 FunFam Calcium-transporting ATPase, putative 129 266 - -
Stsc60621g00010 1033 Pfam E1-E2 ATPase 150 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60621g00010 Stsc-Chr60621 57294 63317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60621g00010 1 1033 Primary Pumps ATPases(2) AT1G07670 75.704 0.0 1642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60621g00010 K01537 - gmx:100788807 1773.06