Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60619g00006 ATGGTTGTATCAGCTACGTTTAGGCGAATCGTCGCTCCTTGTTGGAGGCCATCTGATGTTGAGAATAGGAATGGGGGTGCAAATGGAGAATTTGATGGTTTGCTTTGGTACAAAGATTTAGGAAGACATGCCAATGGGGAATTCTCCATGGCAGTTATTCAGGCAAACAATTTGTTGGAGGATCAAAGCCAGCTTGAATCAGGCCCCATAAGCACGCTCGCAACGAATCCTCATGGAACTTTTGTAGGTATCTATGATGGCCATGGAGGTCCGGAAGCTGCCCAATTCGTGAATGAACGTCTGTTTAAAAATGTCAAGAAATTTTCTTCAGAAAATCATGGAATGTCGGCTGATGTTATCAATAAAGCATTCTTGGCAACAGAAGAGGAATTTCTTTCTGTAGTAAGGAAGCAGTGGCAAATCAAGCCACAGCTAGCCTCTGTTGGATCCTGTTGTTTGACAGGCATAATATGTAGCGGGGTGCTGTATGTTGCGAATGCAGGAGACTCCAGAGCAGTGTTAGCAAGGATGGATGAGGCTACGAAAGAGATTAAAGCTATTCAGTTATCCTCTGAGCATAATGCTAGCTTCGAATCTGTCAGAGAGGAGTTGCGTTCGATGCATCCTGATGATCCACAGATTGTAGTTATGAAGCATCAAGTCTGGCGTGTGAAGGGTCTGATTCAGATTTCAAGATCCATTGGCGACGCCTATCTAAAGAAGGCAGAGTTTAACAAACCACCACTATTGCCGAAATTCAGGCTCTCTGAACCCTTTGAGAAGCCAATCCTTAGAGCCGAACCAGCAGTAACAGTTCAGAAACTCGAACCGGGAGATCAGTTTCTTATATTTGCATCGGATGGATTATGGGAGCATATGAGCAATCAAGAAGCAGTTAACATTGTCCAGAGCTGTCCGCGCAATGGAGTAGCAAGGAGACTCATCAAATCAGCACTTTGTGAAGCTGCTAAAAAGAGAGAGATGAGATACTCAGACTTGCAGAAGATTGAGAAAGGGGTGAGGCGACATTTCCACGATGACATCACAGTCATAGTTTTGTTTCTCGATTCCCAATTAATCGCCCGCGATACTTGGAGCAGCCCTATGGGAAAAATATCCGACCTGCCGGATTCGAACCAGCGACCTAAGGATTACCTGTCAGATTTAAACCACTACAGTCCTCCGCTCTACCAACTGAGCTAA 1203 0.4489 MVVSATFRRIVAPCWRPSDVENRNGGANGEFDGLLWYKDLGRHANGEFSMAVIQANNLLEDQSQLESGPISTLATNPHGTFVGIYDGHGGPEAAQFVNERLFKNVKKFSSENHGMSADVINKAFLATEEEFLSVVRKQWQIKPQLASVGSCCLTGIICSGVLYVANAGDSRAVLARMDEATKEIKAIQLSSEHNASFESVREELRSMHPDDPQIVVMKHQVWRVKGLIQISRSIGDAYLKKAEFNKPPLLPKFRLSEPFEKPILRAEPAVTVQKLEPGDQFLIFASDGLWEHMSNQEAVNIVQSCPRNGVARRLIKSALCEAAKKREMRYSDLQKIEKGVRRHFHDDITVIVLFLDSQLIARDTWSSPMGKISDLPDSNQRPKDYLSDLNHYSPPLYQLS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60619g00006 400 CDD PP2Cc 48 355 IPR001932 -
Stsc60619g00006 400 Pfam Protein phosphatase 2C 73 325 IPR001932 -
Stsc60619g00006 400 SMART PP2C_4 39 353 IPR001932 -
Stsc60619g00006 400 PANTHER PROTEIN PHOSPHATASE 45 353 IPR015655 GO:0004722|GO:0006470
Stsc60619g00006 400 FunFam Phosphatase 2C family protein 36 365 - -
Stsc60619g00006 400 Gene3D - 38 364 IPR036457 -
Stsc60619g00006 400 SUPERFAMILY PP2C-like 73 356 IPR036457 -
Stsc60619g00006 400 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Stsc60619g00006 400 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Stsc60619g00006 400 MobiDBLite consensus disorder prediction 371 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60619g00006 Stsc-Chr60619 37438 40009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60619g00006 1 373 PP2C-type Phosphatase Gene Family AT3G12620 73.333 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60619g00006 K01102 - tcc:18586300 600.897