Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60619g00003 ATGCCGGAGCTTCGTAGTGGAGTGCGACGTGGTCGCGCTGCGGTAGGCCAAAAGGATTCTGAACCACCGGCACCGGCGAGGAGGAACGTGAAGACACGCGCTGCTGCTGCTGCGGCGGCGGGGGCTAAGGGGAGGCCCAGGACAAAGGCGGCGGCTGCGGCGGCAAAGAAGAAGCCGGTGATCGCGACATCGGAAGCTAAGGCGAAAGAGGTTAAAGAGAAGGTTTTACGCGTGATGGGTGATGATAGTGGTGGATTAAGCGCCAACAAGGGTGCTGCACCTGAAGATAACACTCCCCCTTTTCCTGAGAGGGTTCAAGTTGGAGGATCACCGATGTACAAGGTTGACAGGAAACTGGGTAAAGGTGGATTTGGTCAGGTTTTTGTTGGCCGTCGTGAGCGTGCAACCGGCCCTGGAGCTCAGGAGGTGGCTCTGAAATTTGAGCATAGAAACAGTAAAGGCTGTAACTATGGCCCTCCTTATGAGTGGCAAGTTTACAACATCCTTGGTGGCAGTCATGGAATACCTAGGGTACACTACAAAGGAAGACAAGGAGAATATTACATAATGGTTATGGACATGCTTGGTCCGAGTTTGTGGGATGTTTGGAATTCCTCAAGCCAGGCGATGTCTGCTGAAATGGTTTCATGCATAGCTGTTGAGTCCTTGTCAATACTTGAGAAGATGCACTCGAAAGGCTATGTGCATGGAGATGTAAAACCAGAGAACTTCTTACTAGGCCAGCCAGCTACTGCACAAGAGAAGAAACTGTTTCTGGTTGACCTTGGATTAGCAACAAAGTGGCGAGACACCTCAAGTGGGCTGCATGTCGATTATGATCAGCGTCCTGACATGTTTAGAGGGACTGTTCGATATGCTAGTGTTCATGCTCATTTGGGAAGAACTGCAAGTAGAAGGGATGATCTTGAATCTCTTGCATACACACTCATCTTCCTTCATAAAGGGCGGTTACCATGGCAAGGTTATCAGGGTGATACCAAATCCTTCCTCGTTTGCAAAAAGAAGATGGGGACATCACCTGAGATGTTGTGCTGCTTTTGCCCTGCTCCATTTAGGCAATTTCTTGAGGTTGTAGTGAACATGAAATTTGACGAGGAACCCAACTATTCCAAGCTAATATCACTGTTTAATGGGATACTTGACCCAAATCCAGCATTGCGGCCAATTAATACTGATGGCGCTCAAAAGGTTGGACAAAAACGGGGTAGACTGAATATGGAGGAAGAGGACGATTCACAGCCGAAGAAGAAGGTTCGATTAGGGGTTCCTGCTACACAATGGATTTCAGTGTACAATGCAAGACTGCCAATGAAACAAAGGTATCATTATAATGTGGCTGATGCAAGACTAGCACAGCATGTTGAGAGAGGAATTGCAGATGGCCTTCTAATTAGTTGTGTATCATCTTGTTCCAATCTTTGGGCACTTATTATGGATGCTGGAACTGGATTTACAAATCAAGTCTATAAGTTGTCACCTTTTTTCTTGCACAAGGAGTGGATCATGGAGCAGTGGGATAAGAATTATTACATCACTTCTATTGCAGGAGGCAATAATGGAACCTCTCTTGTGGTGATGTCAAAAGGTACACAGTATACTCAACAATCATACAAAGTAAGCGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAAAGAAGGTTTTCATGTCACATCAATGGCTACTGCTGGAAGTCGCTGGGGTGTTGTTATGTCCCGCAATGCTGGATTCAGTGATCAGGTGGTTGAACTTGATTTTCTCTATCCAAGTGAGGGTATTCATAGACGCTGGGATGGTGGTTATAGAATTACTGCAACTGCTGCTACATTGGATCAATCTGCTCTAATATTAAGTATTCCAAGGCGCAAGCCTGGCGATGAAACTCAGGAAACTCTACGTACATCCCAATTTCCCAGCACGCATGTTAAGGAAAAATGGTCGAAGAATCTTTATCTTGCTTGTTTGTGCTATGGGCGTACTGTGTGCTGA 2013 0.4625 MPELRSGVRRGRAAVGQKDSEPPAPARRNVKTRAAAAAAAGAKGRPRTKAAAAAAKKKPVIATSEAKAKEVKEKVLRVMGDDSGGLSANKGAAPEDNTPPFPERVQVGGSPMYKVDRKLGKGGFGQVFVGRRERATGPGAQEVALKFEHRNSKGCNYGPPYEWQVYNILGGSHGIPRVHYKGRQGEYYIMVMDMLGPSLWDVWNSSSQAMSAEMVSCIAVESLSILEKMHSKGYVHGDVKPENFLLGQPATAQEKKLFLVDLGLATKWRDTSSGLHVDYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDTKSFLVCKKKMGTSPEMLCCFCPAPFRQFLEVVVNMKFDEEPNYSKLISLFNGILDPNPALRPINTDGAQKVGQKRGRLNMEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGIADGLLISCVSSCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWDKNYYITSIAGGNNGTSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWKEGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDGGYRITATAATLDQSALILSIPRRKPGDETQETLRTSQFPSTHVKEKWSKNLYLACLCYGRTVC 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60619g00003 670 ProSiteProfiles Protein kinase domain profile. 113 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60619g00003 670 Gene3D Transferase(Phosphotransferase) domain 1 92 430 - -
Stsc60619g00003 670 MobiDBLite consensus disorder prediction 397 423 - -
Stsc60619g00003 670 MobiDBLite consensus disorder prediction 1 68 - -
Stsc60619g00003 670 MobiDBLite consensus disorder prediction 408 423 - -
Stsc60619g00003 670 Pfam Protein kinase domain 113 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60619g00003 670 SUPERFAMILY Protein kinase-like (PK-like) 113 395 IPR011009 -
Stsc60619g00003 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc60619g00003 670 MobiDBLite consensus disorder prediction 80 108 - -
Stsc60619g00003 670 CDD STKc_CK1 112 383 - -
Stsc60619g00003 670 PANTHER CASEIN KINASE-RELATED 107 632 - -
Stsc60619g00003 670 FunFam casein kinase 1-like protein HD16 87 426 - -
Stsc60619g00003 670 ProSitePatterns Protein kinases ATP-binding region signature. 119 146 IPR017441 GO:0005524
Stsc60619g00003 670 MobiDBLite consensus disorder prediction 1 16 - -
Stsc60619g00003 670 SMART serkin_6 113 402 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60619g00003 Stsc-Chr60619 13471 19213 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60619g00003 115 383 MAP Kinase Kinase Kinase AT5G50180 22.695 1.42e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Stsc60619g00003 Pkinase 1.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60619g00003 - - gmx:100819969 1165.21