Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60618g00002 ATGGCTGATTTGGATTTAGGAACAGTATCACTCTTCCTTCACAAACCAGAATTACACCCTCAACAACACCACCATTATCACCATTCACAACAACAACAAACACCAAATCCTGCATCTGCACCACAATTCTCCAGTGAAGATGATGATAACAGCCATGCCGCCGGAAGCAGTAGCTTTGATCTCGCCTCCGCCGCCGGCAGATTCCGCCGTTCCCGTGGCCGTCCTCGGGGCTCGAAGAACAAGCCGAAACCACCACTCGTAATCACAAGAGCGAGCGACAACACGCACAGCGCTCAAATCTTCGAAATCGCCAGTGGCTCCGATGTCTTCGACAGCGTCGCCACCTACGCGCTGCGGCGCCAGCGCGGGGTCTGCATCTTGAGCGGCAACGGCGCCGTCACCAATGTCACCATCCGAGACCCCGCGGCGCCCGGCTCAGTCGTCACGCTCCACGGAAGGTTCGAGATACTCTCGCTCTCTGGCTCGTTCCTCCCGCCGCCTGCTCCGCCTGGCGCGACGAGCCTCAGTATATACCTCGCCGGAGGGAAGGGACAGGTCATCGGCGGAAACGTCGTCGGAGATCTGATTGCGGCGGGGCCGGTGACGGTCATCGCCTCGTCTTTCACTAACGTGGCGTACGAGCGTCTGCCTTCGGACGAGGAGGACGAAGAGGAGCTCCGAATTCAGCCGGCGCCGGCACCGGAAGCTCCTCAGGGAAACTCCGGCGGTTGCGGAGTCGAGAGCAACGGGTTTCTGGATCCTTGTTCTGGTTTGGCGTCCTTCAATTTTCCGGTCGGTATGAATCAGAATGTTCAGCTGCCAGCAGACAGTTATTTTTCAGGTCCACGCCCTTTATTTTAA 861 0.5784 MADLDLGTVSLFLHKPELHPQQHHHYHHSQQQQTPNPASAPQFSSEDDDNSHAAGSSSFDLASAAGRFRRSRGRPRGSKNKPKPPLVITRASDNTHSAQIFEIASGSDVFDSVATYALRRQRGVCILSGNGAVTNVTIRDPAAPGSVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGKGQVIGGNVVGDLIAAGPVTVIASSFTNVAYERLPSDEEDEEELRIQPAPAPEAPQGNSGGCGVESNGFLDPCSGLASFNFPVGMNQNVQLPADSYFSGPRPLF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60618g00002 286 Gene3D - 98 232 - -
Stsc60618g00002 286 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Stsc60618g00002 286 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 33 234 IPR014476 GO:0003680
Stsc60618g00002 286 MobiDBLite consensus disorder prediction 20 91 - -
Stsc60618g00002 286 MobiDBLite consensus disorder prediction 27 58 - -
Stsc60618g00002 286 FunFam AT-hook motif nuclear-localized protein 96 224 - -
Stsc60618g00002 286 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 228 - -
Stsc60618g00002 286 MobiDBLite consensus disorder prediction 217 245 - -
Stsc60618g00002 286 CDD DUF296 100 208 IPR005175 -
Stsc60618g00002 286 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 210 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60618g00002 Stsc-Chr60618 20136 20996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60618g00002 1 278 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 49.662 2.04e-70 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60618g00002 - - csav:115715847 282.722