Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60615g00010 ATGGCTTTGGAGGCTCTGAATTCTCCTACAGGTGCAGTGACGGCTCCTTTCTTTCCTAAGTTCCAAGATCATGAAGAAGAAGATGAAGAGCTTCATCATCAGGTGCGTGAGCCATGGGCAAAGAGGAAGAGATCAAAACGACCGCGTTTCGAGAACCCTCCCACTGAAGAAGAATATCTCGCTCTCTGCCTCATCATGTTAGCTCACAGCGGCAACAACAACAACAACAAGGTCGTCACTGAAACTACTCTACTCAAGAACGAAAAAACAGAGTCTTCCTCTTCACAACCGCCACAAGAACCCTCATCCTCACCGCCGCCGCCTATGAAGCTGACTCACAGGTGCACCGTCTGTAACAAGGCCTTCCCTTCTTACCAAGCACTCGGCGGACACAAGGCCAGCCACCGCAAATCTTCCACCTCTTCTGAAAACAACACCGCCACGGCACCTGTAGTGAACAACAACGAAAACGTGTCATCCGGCTCCGCCGCCACGAACGGTCCAAGGATGCACGAGTGTTCCATATGTCACAAGTCTTTCCCTACCGGTCAGGCTTTGGGCGGCCACAAACGCTGCCACTACGAAGGTGGCAACAACCACAACAACAACAGCAGCGCCGTGGTGTCTTCAGAAGGCGGCGCCTCCTCCCACAGCTTCCGTGGCTTTGACCTGAACCTGCCTGCTCCCCTGGCCGAGTCGTGGTCGCCGGCCGGGCTTGACGTGACGGAAGCCAAGAAAAAGATGAAGAACAGCAAGGTTGAAGAACAAGAAGTGGAAAGTCCCCTGCCCGCGAAGAGGGCGCGTTTGTTTGAAGACGCTCATCATCGGAATTAA 834 0.536 MALEALNSPTGAVTAPFFPKFQDHEEEDEELHHQVREPWAKRKRSKRPRFENPPTEEEYLALCLIMLAHSGNNNNNKVVTETTLLKNEKTESSSSQPPQEPSSSPPPPMKLTHRCTVCNKAFPSYQALGGHKASHRKSSTSSENNTATAPVVNNNENVSSGSAATNGPRMHECSICHKSFPTGQALGGHKRCHYEGGNNHNNNSSAVVSSEGGASSHSFRGFDLNLPAPLAESWSPAGLDVTEAKKKMKNSKVEEQEVESPLPAKRARLFEDAHHRN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60615g00010 277 Gene3D Classic Zinc Finger 111 193 - -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 1 54 - -
Stsc60615g00010 277 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 42 228 IPR044653 GO:0003700
Stsc60615g00010 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 193 IPR013087 -
Stsc60615g00010 277 Pfam C2H2-type zinc finger 113 137 - -
Stsc60615g00010 277 Pfam C2H2-type zinc finger 171 194 - -
Stsc60615g00010 277 SMART c2h2final6 171 193 IPR013087 -
Stsc60615g00010 277 SMART c2h2final6 113 135 IPR013087 -
Stsc60615g00010 277 SUPERFAMILY beta-beta-alpha zinc fingers 113 193 IPR036236 -
Stsc60615g00010 277 Coils Coil 239 259 - -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 20 37 - -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 87 113 - -
Stsc60615g00010 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 140 IPR013087 -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 129 168 - -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 133 167 - -
Stsc60615g00010 277 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Stsc60615g00010 277 MobiDBLite consensus disorder prediction 245 277 - -
Stsc60615g00010 277 ProSitePatterns Zinc finger C2H2 type domain signature. 115 135 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60615g00010 Stsc-Chr60615 47292 48953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60615g00010 1 269 C2H2 Transcription Factor Family AT1G27730 42.238 2.40e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc60615g00010 zf-C2H2_6 2.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60615g00010 - - aip:107618861 285.804