Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60615g00002 ATGGCATCAGCAGCTGCCCCGGCGTCGCTCGGCCGAGAGCTGTCGGATCCTCCGTCCGACGGAATCTCCAACCTCCGCTTCTCCAACCACAGCGATCTCCTCCTCGTCTCTTCTTGGGATAAGAGCGTGCGCTTGTACGATGCCAGCGCCAATGTGCTCAGGGCTGAGTTCATGCACGGCGGCCCCGTCCTCGATTGCTGCTTCCACGACGACTCTTCCGGTTTCAGCGCTGCTGCCGACAACACCGTCAGGCGCCTCCTCTTCGCCTCTAACAAGGACGACATCCTCGGAAAGCACGACGCTCCTGTTCGTTGTGTTGAGTACTCCTACGCCGCAGGGCAATTGATCACTGGTAGTTGGGATAAAACCTTGAAGTGCTGGGATCCCAGGGGTGCAAGTGGACAGGAGCGCACTCTGGTTGGGACATATCCACAACCTGAGCGTGTTTACTCCATCTCTCTTGTTGGACATCGGCTAGTTGTAGCAACAGCTGGAAGGCATGTCAATATTTATGATTTAAGGAACATGTCTCAACCTGAGCAACGGAGAGAATCTTCATTGAAATATCAAACAAGATGTGTGCGTTGTTACCCCAATGGAACAGGATATGCCCTGAGTTCTGTGGAAGGACGTGTTGCAATGGAATTCTTTGACCTCTCCGAGGCTAGCCAAGCAAAAAAATATGCTTTTAAGTGTCACCGAAAATCAGAAGCTGGAAGGGACATTGTCTATCCTGTAAATGCCATTGCATTCCACCCTGTATATGGTACGTTTGCCACAGGAGGTTGTGACGGGTATGTTAATGTTTGGGATGGAAACAACAAGAAGAGGCTGTACCAGTACTCAAAGTATCCAACAAGCATTGCTGCACTTTCATTTAGCAGAGATGGACGGCTCCTAGCTGTTGCATCAAGTTATACATTTGAAGAGGGGCTTAAACCCCATGAGAAGGATGCAATTTACATCCGCGGTGTGAATGAGATTGAGGTCAAGCCAAAACCCAAGGTCCTTCCTCCAGCTTGA 1023 0.5064 MASAAAPASLGRELSDPPSDGISNLRFSNHSDLLLVSSWDKSVRLYDASANVLRAEFMHGGPVLDCCFHDDSSGFSAAADNTVRRLLFASNKDDILGKHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGASGQERTLVGTYPQPERVYSISLVGHRLVVATAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAIAFHPVYGTFATGGCDGYVNVWDGNNKKRLYQYSKYPTSIAALSFSRDGRLLAVASSYTFEEGLKPHEKDAIYIRGVNEIEVKPKPKVLPPA 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60615g00002 340 Gene3D - 9 336 IPR015943 GO:0005515
Stsc60615g00002 340 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 96 128 - -
Stsc60615g00002 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 246 280 IPR001680 GO:0005515
Stsc60615g00002 340 PANTHER MRNA EXPORT FACTOR AND BUB3 13 327 - -
Stsc60615g00002 340 SUPERFAMILY WD40 repeat-like 18 305 IPR036322 GO:0005515
Stsc60615g00002 340 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Stsc60615g00002 340 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Stsc60615g00002 340 PRINTS G protein beta WD-40 repeat signature 115 129 IPR020472 -
Stsc60615g00002 340 ProSiteProfiles Trp-Asp (WD) repeats profile. 96 128 IPR001680 GO:0005515
Stsc60615g00002 340 FunFam Mitotic checkpoint protein bub3, putative 7 335 - -
Stsc60615g00002 340 SMART WD40_4 7 47 IPR001680 GO:0005515
Stsc60615g00002 340 SMART WD40_4 50 87 IPR001680 GO:0005515
Stsc60615g00002 340 SMART WD40_4 89 128 IPR001680 GO:0005515
Stsc60615g00002 340 SMART WD40_4 136 172 IPR001680 GO:0005515
Stsc60615g00002 340 SMART WD40_4 223 271 IPR001680 GO:0005515
Stsc60615g00002 340 Pfam WD domain, G-beta repeat 96 128 IPR001680 GO:0005515
Stsc60615g00002 340 Pfam WD domain, G-beta repeat 20 47 IPR001680 GO:0005515
Stsc60615g00002 340 Pfam WD domain, G-beta repeat 230 271 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60615g00002 Stsc-Chr60615 8518 11571 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60615g00002 96 313 U-box Gene Family AT2G33340 24.775 2.03e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60615g00002 K02180 - mnt:21387210 648.662