Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60613g00016 ATGTGCAGCAGCTTAGTGAGGGCAATGGAGAACAATAATTACAACCACCAGGGTGATTTAACCGATATACTCCGTGGAGGACCATTCGGCGGTGCTGCCTCCGCTTCCGATGAACCACCGTCGTCATATCACTGGCAACAACAACAACTCGACAACGACGCCACCAGCAGCTGCTACTTTGGGGATCCATTCTCAACCATGAGAGATCCTTTCCTTCACGAGCTTCACATCCCTCCTTCCTCCTCTTACTTCGAAGAACCACCACTACCACCACCGCCACCGCCGCCGCCGCCTACCTTGGCTACTCCTCCTGTTTATAACAGTTACGGTGGTGGTGCACACCTTCATCAACATGAGATGAGATCTTCATCTTGTTCTGCTTCTTCTTCTTCGATTAGCTGCAACAACATATTCTCGAACATGATTCAGATCTCTCCGAGCGCTAATAACACTTCGTCTTCTTCTTCGTCTCCAAGACCTGCAGCAATTAAGGCTTCTCCATCATCATCGTCTTCTTCTTCTATGCTCTCAAACTCCATGGTCAATGCAACATCAATCCCTTCCAACAAGCAAGATTGCCATCTTCTCGACAACGCTGCTGCACTCCAGATCTCATCTCCGCGCAATCCCGCTCTTAAGCGCAGGAAGAATCAGGCGAAAAAGGTGGTGTGTATTCCTGCACCAGCAGCTGCAAACAGCAGACAAACTGGAGAGGTTGTTCCTTCCGATTTGTGGGCATGGAGAAAATATGGTCAGAAACCCATCAAAGGTTCACCTTATCCAAGGGGTTACTATAGATGCAGCAGCTCAAAGGGTTGTTCAGCAAGGAAACAAGTGGAGAGGAGCAGAACAGATCCAAATATGCTTGTTATTACTTACACTTCTGAGCACAATCATCCATGGCCTACTCAGAGAAATGCTCTTGCTGGTTCAACAAGGTCTCAGCCATCCAAGAACAGCAACAACAGCAGCAGCAATGCTAATAACAACAATGCTTCTTCAAAGAATTCAGAACCCTCAAAGGTTTGTGGTAATAATAATAATAAGCTAAAGGAGGAGAATAGTAATCAGCAGCAAGAGATGAGCAGTGAAGGAGGGAGTGCTTCAGTGAAGGAAGAGATGGATCATCATCATCATCAGCAGCATAGTAATCATGAGCTTGAGCTTGAACTTGAGTTGGATAATGATGAAGAATTCAGTGATGGACTTTCATACAAGCCATCAATGATTGAAGAGGGTGGTAATAATAATAACAATAACAATCAATCTTCTGAGGATTTCTTTGCAGATTTGGGGGAAATTGAAGCTGATCCATTGAACCTGTTGTTCAGTAGTAGTCATCAAGGTTACAATGCAGGTGGAGGTGGTGGTGGTGATGATCAAAGGGAATCCAAGGCCTTAGATCCATTCAATATCTTTGATTGGTCTTCATCAGGAGGAGACACCAATAGCAACAACAATTCATCATTTGAAGAACCTAATAATAATAAGGGAAGGTTATAA 1503 0.4478 MCSSLVRAMENNNYNHQGDLTDILRGGPFGGAASASDEPPSSYHWQQQQLDNDATSSCYFGDPFSTMRDPFLHELHIPPSSSYFEEPPLPPPPPPPPPTLATPPVYNSYGGGAHLHQHEMRSSSCSASSSSISCNNIFSNMIQISPSANNTSSSSSSPRPAAIKASPSSSSSSSMLSNSMVNATSIPSNKQDCHLLDNAAALQISSPRNPALKRRKNQAKKVVCIPAPAAANSRQTGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSQPSKNSNNSSSNANNNNASSKNSEPSKVCGNNNNKLKEENSNQQQEMSSEGGSASVKEEMDHHHHQQHSNHELELELELDNDEEFSDGLSYKPSMIEEGGNNNNNNNQSSEDFFADLGEIEADPLNLLFSSSHQGYNAGGGGGGDDQRESKALDPFNIFDWSSSGGDTNSNNNSSFEEPNNNKGRL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 369 389 - -
Stsc60613g00016 500 SMART WRKY_cls 241 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60613g00016 500 SUPERFAMILY WRKY DNA-binding domain 239 302 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 83 103 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 77 113 - -
Stsc60613g00016 500 Gene3D WRKY domain 215 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 410 425 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 147 177 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 25 48 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 293 425 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 293 366 - -
Stsc60613g00016 500 ProSiteProfiles WRKY domain profile. 236 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 475 500 - -
Stsc60613g00016 500 MobiDBLite consensus disorder prediction 446 500 - -
Stsc60613g00016 500 FunFam probable WRKY transcription factor 14 215 295 - -
Stsc60613g00016 500 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 122 443 IPR044810 GO:0003700
Stsc60613g00016 500 Pfam WRKY DNA -binding domain 243 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60613g00016 Stsc-Chr60613 68223 71205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60613g00016 1 486 WRKY Transcription Factor Family AT1G30650 41.010 3.35e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc60613g00016 WRKY 2.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60613g00016 - - aprc:113852911 384.03