Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60613g00010 ATGGATGGAGTTCCAGGGAAAAGTCTAGATTGTCTATCAGAAGGGTGCATCAAGCCCCAAAACANNNNNNNNNNTCTGGCTTCCAGTCCTCCTATTCCGAGTGATGATGATACTGTTGATATTAAGCCTCTTCAAGTTTCTAGAGATATGGTGCCATTTTCTGGTCCAAAAAGGTCTATTGTAAGACTGGATAATCTTATAATGGAAGCAATAACTACCTTGAAGGAAACTGGTGGTTCTAATAAGACAACTATTGCAGCTTTCATAGAGGACCAATATTGGGCACCACCTGACTTCAAAAGGTTGTTGTCAGCAAAGTTAAAGTATTTGACAGCATGTGGAAAACTGATCAAGGTAAAACGCAGGTATAGGATTGCACCTACTCCAGCATATTCTGACAGAAGAAGAAGCTCAAGCTTGTTATTAACTGATGGGAGGCAGAAAGCCCCTTTGAGAGGTGACAAGGAAGAGACCAATGTCCTTACAAAGTCTCAGATAGATTTAGAATTAGCAAAGATAAGGTCGATGTCTGCACAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTGCAGAAGCGGAGGCTGCCATAGCAGAAGCCGAAGAGGCAGCAAGAGAGGCAGAGGCTGCAGAAGCTGATGCAGAGGCGGCACAAGCTTTTGCAGATGCTGCTATGAAAACACTGAAAGGGCGAAACACCCCTAAGATGATGATCCATGCTTGA 720 0.4375 MDGVPGKSLDCLSEGCIKPQNXXXXLASSPPIPSDDDTVDIKPLQVSRDMVPFSGPKRSIVRLDNLIMEAITTLKETGGSNKTTIAAFIEDQYWAPPDFKRLLSAKLKYLTACGKLIKVKRRYRIAPTPAYSDRRRSSSLLLTDGRQKAPLRGDKEETNVLTKSQIDLELAKIRSMSAQEAAAVAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQAFADAAMKTLKGRNTPKMMIHA 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60613g00010 239 SMART h15plus2 57 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60613g00010 239 FunFam Telomere repeat-binding factor 1 57 137 - -
Stsc60613g00010 239 Coils Coil 182 219 - -
Stsc60613g00010 239 Pfam linker histone H1 and H5 family 64 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60613g00010 239 PANTHER SINGLE MYB HISTONE 4 29 233 IPR044597 GO:0003691
Stsc60613g00010 239 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 59 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc60613g00010 239 Gene3D - 57 136 IPR036388 -
Stsc60613g00010 239 SUPERFAMILY "Winged helix" DNA-binding domain 56 136 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60613g00010 Stsc-Chr60613 37030 40769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60613g00010 19 239 Single Myb Histone (SMH) Gene Family AT1G49950 60.352 8.73e-49 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60613g00010 K09422 - zju:107426939 229.18