Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60612g00008 ATGGAAGAAGAAGCACTTACGGTGAAGCAAGAACAAGAATCGGAACAACCACAACCGCAACCGAGGGAAGGGTTGAACGAGGCTGGTCCACCTCCCTTCCTAACGAAGACTTTCGATATGGTTGATGACTCTTCCATTGATTCCATTGTTTCTTGGAGTGTCACTCGCAACTCCTTCGTTGTTTGGGACCCTCACAAGTTCTCCACTACGATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCCAGCTTCATTCGCCAGCTCAACACTTATGGATTTCGAAAAGTTGATCCTGATCGGTGGGAATTTGCTAACGAAGGTTTCTTGGCGGGACAGAAGCACTTGTTGAAGACCATAAGGAGAAGAAGAAATGTATCGCAGGGAGCACAGCAAAGCCAAAGAGGAGGCGGAGGTCCTATTGTTGAGTTGGGGGAGTATGGTTTAGAAGGTGAGGTTGAAAGGTTGATGAGAGACCGGAACGTGTTGATGGCCGAAATCGTAAAATTGAGGCAGCAACAGCAGAACTCACGAAATGAAGTGCTTGCGATGGAGGTTAGGTTGCAAGCCACAGAGAACAAACAGCAACAGATGATGACTTTCCTTGCCAAAGCAATGAACAATCCCTCTTTCATGCAGCAGTTAGCTCACAAGAATTCCCAGAACCCGCAATTGTTTGGCGTCGATGTTAAGAGGAAGAGGAGACTAACTGCTAGCCCAAACGTGGATCCGGTGCCAGCAGTAGCAGCAGTGCCTATTGAATCAGTAGCGGAGGACAATCCAAACCCCGAACAAGAACTTGCAAATATCGAGTATGAGATGGATACATTTTTCGCAACATCTTATGATTATGAGCCTAACTGCAAAATCAATGACCCTTTATCAACAACTTCAGCATCGGGGGATACAATCTTGGAGGATTTTCTCAAGGAAGATTTGGTTACTGGGAATCCAAAGGATGAAATTGTGATTGGTGATTGTTCAATTGATATTCCCGTAGAGGATTTGGTTGCAAAGCCTAAGGATTGGACTGAGGAATTGCAGGACCTTGTGGATCATATGGGATTTCTTGGTTCCAAACCTTAG 1083 0.4571 MEEEALTVKQEQESEQPQPQPREGLNEAGPPPFLTKTFDMVDDSSIDSIVSWSVTRNSFVVWDPHKFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIRRRRNVSQGAQQSQRGGGGPIVELGEYGLEGEVERLMRDRNVLMAEIVKLRQQQQNSRNEVLAMEVRLQATENKQQQMMTFLAKAMNNPSFMQQLAHKNSQNPQLFGVDVKRKRRLTASPNVDPVPAVAAVPIESVAEDNPNPEQELANIEYEMDTFFATSYDYEPNCKINDPLSTTSASGDTILEDFLKEDLVTGNPKDEIVIGDCSIDIPVEDLVAKPKDWTEELQDLVDHMGFLGSKP 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60612g00008 360 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 245 IPR027725 -
Stsc60612g00008 360 Gene3D - 26 123 IPR036388 -
Stsc60612g00008 360 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 Coils Coil 152 179 - -
Stsc60612g00008 360 MobiDBLite consensus disorder prediction 1 32 - -
Stsc60612g00008 360 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 SUPERFAMILY "Winged helix" DNA-binding domain 29 122 IPR036390 -
Stsc60612g00008 360 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc60612g00008 360 FunFam Heat shock transcription factor 1 26 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60612g00008 Stsc-Chr60612 55234 58427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60612g00008 19 360 HSF AT2G26150 54.651 5.65e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc60612g00008 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60612g00008 K09419 - gmx:100820298 429.483