Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60611g00003 ATGGATTTTCCAATGTTCATCTCCCTTTTCCTTTTCATGATCATGGTATACACAATAGTGATGAAAAAGCCTAACAATACCAGATCTCTCAGGTTACCACCAGGGCCATACAAGCTACCCATAATTGGGAACCTACATAACCTCTTTGGTTCATCACTACCCCACCATACATTGAGAGATTTATCAACAAAATATGGATCCTTGATGCATCTTAAGCTAGGTGAAGTTTCTGCTATAGTGGTATCTTCACCTGAATATGCCAAGGAGTTCTTGAAAACCCATGACCTGAATTTTTCATCAAGACCCCCAATTCTAGCTTCAAAGATAATGTCCTATGGTTCTAAGGGCTTATCTTTTTCACCATACGGTGATTATTATAGACATTTAAGGAAGATGTGTGTGTTGGAGCTTTTGAGCTCTAAACGTGTCCAATCTTTACAACCAATCAGAGTTGAAGAGCTCAACAATCTCATCAAATTGATTGATGCTTCATCAAAAGAAGGATCAGCTATCAATCTTTCCAAAGAAGTGCTCTCAACAATATCAAATATTGCTTCAAGGTCTGCATTTGGCACCAAGTGCAGGTACCACCAGGAATTCATATCAGTTGTTAAAGAAGCTATATTAGTTTCAGGAGGTTTTGAGATTGGAGATTTGTACCCTTCTATTACATGGCTTCAATATGTCTCTGGGCTGAAGCCAAAGCTTGAGAAATTGCACCGTGAAGCTGATCACATCATGCAAAACATTTTCAATGACCACAGAGAGATGAAATCATCACAACAAAAGAGTGATGATGAGGAAGAAGCAAATGAGTACCTCTTAGATGTGCTCTTCAAATTCCAGGGTAGTAGTGTTCAGCAAGACTTTCAATTATCAGATGAAAGTATCAAGGCTGTGATATTGGACATTTTTGCAGCAGGATCTGAGACATCAGCTACAACAGTATTGTGGGCAATGGCAGAGATGATTAAGAATCCATTGATAATGAAGAAGGCACAAGATGAAGTAAGAGAGTTACTTGACAAAGAAGGAACAAGTGGTATGGAAAAACTAAAATACTTGAAATCAGTTGTGAAAGAGACACTGAGATTGCACCCACCTGGTGCATTTCTGCTTCCAAGAGAATGTGGACAAGCCTGTGAGATCAATGGATATCATATACCTTCAAAAAGCAAAGTAATAATCAATGCTTGGGCAATTGGGAGAGACCCAAATCATTGGGTTGAGCCTGAAAGGTTCAATCCTGAAAGGTTCATGAATAGCTCTGTTGATTACAGAGGAAACAACTTCGAATTCATTCCGTTCGGTGCCGGAAGAAGAATGTGCCCGGGAATCGCATTCGGGGTGGCTAGCACTGAGTCTACACTTGCAATTTTGTTGTACCATTTTGATTGGAAGCTTCCGATTGGAATGGAAATACAAGACTTGGACATGTCTGAAGCTTTTGGAGTTGCAGTGATGAGAAAAGAACATTTGTGCCTTGTTCCCATCACTTCTCGTCCTATATGCAACTGA 1518 0.3979 MDFPMFISLFLFMIMVYTIVMKKPNNTRSLRLPPGPYKLPIIGNLHNLFGSSLPHHTLRDLSTKYGSLMHLKLGEVSAIVVSSPEYAKEFLKTHDLNFSSRPPILASKIMSYGSKGLSFSPYGDYYRHLRKMCVLELLSSKRVQSLQPIRVEELNNLIKLIDASSKEGSAINLSKEVLSTISNIASRSAFGTKCRYHQEFISVVKEAILVSGGFEIGDLYPSITWLQYVSGLKPKLEKLHREADHIMQNIFNDHREMKSSQQKSDDEEEANEYLLDVLFKFQGSSVQQDFQLSDESIKAVILDIFAAGSETSATTVLWAMAEMIKNPLIMKKAQDEVRELLDKEGTSGMEKLKYLKSVVKETLRLHPPGAFLLPRECGQACEINGYHIPSKSKVIINAWAIGRDPNHWVEPERFNPERFMNSSVDYRGNNFEFIPFGAGRRMCPGIAFGVASTESTLAILLYHFDWKLPIGMEIQDLDMSEAFGVAVMRKEHLCLVPITSRPICN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60611g00003 505 PANTHER CYTOCHROME P450 71B11-RELATED 15 498 - -
Stsc60611g00003 505 SUPERFAMILY Cytochrome P450 33 496 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS P450 superfamily signature 434 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 436 445 IPR017972 GO:0005506|GO:0016705
Stsc60611g00003 505 FunFam Cytochrome P450 99A2 22 498 - -
Stsc60611g00003 505 Pfam Cytochrome P450 33 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 Gene3D Cytochrome P450 25 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 CDD CYP71-like 64 493 - -
Stsc60611g00003 505 PRINTS E-class P450 group I signature 397 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 433 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 443 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 180 198 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00003 505 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60611g00003 Stsc-Chr60611 19401 22021 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60611g00003 10 497 Cytochrome P450 AT3G26300 42.656 1.41e-137 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60611g00003 - K13267 gmx:100813216 663.299