Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60611g00002 ATGGAGTTTGTTCTCCAATACCTTCCCTCAAATTCAACCTTATCCTTCTTTCTTTTCTTGCTCACGGTGGTGTTTATCATATTTTCAAGATCAAGATCGAAGCCACAAAACTCAAAATTGCCACCAGGACCACCAAAACTACCCCTTATAGGGAACATGCACCAACTTAGTTCTATGCCTCACCGTGGCCTAACAAAATTAGCACAAGAATATGGCCCTCTTATGCACATAAAGCTAGGTTCACTCTCAACCATAGTTGTTTCTTCACCTGAAATGGCCAAAGAAGTTATGAGAACACATGACATAATATTTGCGAATAGGCCTCACAATCTTGCTGCTGATATTATAACCTATGGTTCTAAGGGGATGAGTTTTTCACCTCAAGGAAGCTATTGGAGGCAGATGAGGAAGATTTGTACTTTCGAGCTATTGGCACCGAAGCGAGTCGAATCGTTTCGGTCGATCCGGGAACAAGAAGCATCACATCTTGTTAAGGATTTAAGTTCCAATCATGGGTCTATCATTAATTTCAGCAAGGTTATATATTCAGTGTCATATGGGTTAACATCAAGAGTTGCCTTTGGGGAAAAGTCAACGGACCAAGAAGCGTTCATAGAAGCTATGAAGGATGTGTCCAAAGTTGTTTCTGGTTTCTCTTTGGCTGATTTGTATCCTTCATTTGAAGTGCTTAGTGTTGTGACAGGGTTAAGATCAAAAACAGAGAAGATTCATCAAGAACTAGATAGGATCCTTGGAAAGATTGTGAGAGATCACAAGGAAAGAAAGGAAGTGAAGGAAAAGTCAACGGAGGATATTGTTGATGTCTTATTAAAGCTTCAGAAGCAGAGCAACCTTGAGCACCCTCTATCTGACAATGTTATCAAAGCAACAATTTTGGATATTTTTGCTGCCGGAAGTGGCACCTCAGCGAAAACATTAGATTGGTCGATGTCAGAACTTATCAAAAACCCAAGCGTGATGGAAAGAGCACAAGCCGAGATAAGAAGGGTGTTTGATTCAAGAGGGTGTGTAGACGAAACAAACCTCCATGAAATCAAGTATTTAAAAGCAGTAATCAAAGAAACACTCCGCTTACATCCTCCAGTTCCTTTTTTATTGCCAAGGGAATGCAGCGAGAGATGTGAAATCAATGGCTATGAAATCCCAGCAAAGAGCAAGGTGATTGTTAATGCTTGGGGAATTGGGAGGGACCCAAGACACTGGAATGAAGAAGCTGAGAAATTTGATCCCAAAAGGTTTCTTGATGGCTCTATTGATTTCAAAGGTGCAGATTTTCAGTTCATTCCATTTGGTGCCGGAAGAAGGATTTGTCCTGGAATTACTTTTGGAGTTGCTAGTGTTGAACTCATACTTGCAAATTTGCTTTTTCATTTTGATTGGAAGCTACCTAATGGCGAGAATACTCAAGACCTTGATATGTCGGAATCATTTGGATTGTCCGTTAGAAGAAAACATGATTTGTACTTGATTCCTATTGCGTATCATCATCACTCTTCTGCTTATTAG 1527 0.4021 MEFVLQYLPSNSTLSFFLFLLTVVFIIFSRSRSKPQNSKLPPGPPKLPLIGNMHQLSSMPHRGLTKLAQEYGPLMHIKLGSLSTIVVSSPEMAKEVMRTHDIIFANRPHNLAADIITYGSKGMSFSPQGSYWRQMRKICTFELLAPKRVESFRSIREQEASHLVKDLSSNHGSIINFSKVIYSVSYGLTSRVAFGEKSTDQEAFIEAMKDVSKVVSGFSLADLYPSFEVLSVVTGLRSKTEKIHQELDRILGKIVRDHKERKEVKEKSTEDIVDVLLKLQKQSNLEHPLSDNVIKATILDIFAAGSGTSAKTLDWSMSELIKNPSVMERAQAEIRRVFDSRGCVDETNLHEIKYLKAVIKETLRLHPPVPFLLPRECSERCEINGYEIPAKSKVIVNAWGIGRDPRHWNEEAEKFDPKRFLDGSIDFKGADFQFIPFGAGRRICPGITFGVASVELILANLLFHFDWKLPNGENTQDLDMSESFGLSVRRKHDLYLIPIAYHHHSSAY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60611g00002 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 437 446 IPR017972 GO:0005506|GO:0016705
Stsc60611g00002 508 PANTHER CYTOCHROME P450 71B11-RELATED 23 499 - -
Stsc60611g00002 508 Gene3D Cytochrome P450 25 499 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 SUPERFAMILY Cytochrome P450 39 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 434 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 444 467 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 68 87 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 92 113 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 CDD CYP71-like 70 494 - -
Stsc60611g00002 508 FunFam Cytochrome P450 71D8 33 498 - -
Stsc60611g00002 508 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS P450 superfamily signature 435 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60611g00002 508 Pfam Cytochrome P450 41 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60611g00002 Stsc-Chr60611 16066 18235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60611g00002 16 499 Cytochrome P450 AT5G25180 41.176 9.97e-135 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60611g00002 - - gmx:100818000 737.643