Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60610g00003 ATGCGCCTGTTGACAACAGCTGCTTTTGATCGTGGTAAGGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAGCTTTACAAATTGATGAGCAGAGACAATGATGATGATGATGAGGGACCAGATGAGGATGATGCAGAATTAGCCCGCATCTCTTCAAGATTGCAGGACTTGGATCCAACATTTGTGCCCAAGTTAGAAACAGGTACCTCTCAAAATGCTGAGGTGCCTCGTGTTCGTCCTCTCACTCAAGAAGATTTCCAGATCGTATTTGGAGTAGAAAGGTTCAGATGCCCCGAAATATTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGCTTAGATGAGATGACTGGAGTTTCCATGAGAAGGTTACCATTCAAGGATGAAAGCCTGGAATCGAGACTGACTAGTTCCATATTATTGACTGGTGGAAGTTCTCTTTTCCCTGGTATCGTCGAACGCCTAGAAGCCGGAATTCGGATGATTAGACCTTGTGGATCGCCAATAAAGATAGTAAGAGCACTGGATCCAGTGATGGATGCATGGCGTGGGGCTGCTGCCTATGCATCAGGCCCGCAATTCCATACACAAACTTTCAGTAAGATGGATTATTATGAAAAGGGTGAGGACTGGCTTCGCAGTTATCAACTGAAATACTCGTTATGA 675 0.4489 MRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSRDNDDDDEGPDEDDAELARISSRLQDLDPTFVPKLETGTSQNAEVPRVRPLTQEDFQIVFGVERFRCPEILFNPNWIGVDQVGLDEMTGVSMRRLPFKDESLESRLTSSILLTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAAAYASGPQFHTQTFSKMDYYEKGEDWLRSYQLKYSL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60610g00003 224 Gene3D - 184 212 - -
Stsc60610g00003 224 FunFam ARP5 actin-related protein 5 homolog 114 183 - -
Stsc60610g00003 224 FunFam Putative actin-related protein 5 184 212 - -
Stsc60610g00003 224 Gene3D Actin; Chain A, domain 4 44 113 - -
Stsc60610g00003 224 Pfam Actin 89 216 IPR004000 -
Stsc60610g00003 224 Gene3D - 114 183 - -
Stsc60610g00003 224 PANTHER ACTIN 85 212 IPR004000 -
Stsc60610g00003 224 FunFam Actin-related protein 5 84 113 - -
Stsc60610g00003 224 SUPERFAMILY Actin-like ATPase domain 68 216 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60610g00003 Stsc-Chr60610 17227 18013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60610g00003 48 211 Cytoskeleton Gene Families AT5G09810 33.333 2.26e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60610g00003 K11672 - gmx:100808396 382.874