Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60609g00011 ATGGATTGTAACACCATCACATGTGCATCAATAGAAGAACAAGGGTCATCAATCAACAAGAGGAAGAAGAAAGGTAGTAATGGTAGCATGAACAATAACAATAACAATACTAAGAAGAAGAATAAGGGAGTGATGAAACTTTCAACTGACCCACAAAGTGTGGCAGCAAGAGAAAGAAGGCACAGAATCAGTGACAGGTTCAAGATCCTTCAGAGCATGGTCCCTGGTGGCAGCAAGATGGACACTGTGTCTATGTTGGAGGAAGCCATTCACTATGTTAAGTTCCTCAAAGCTCAGATTTGGCTCCACCAAACTCTCATGATGAACTATGATCATGATAATGTGGATAACAATAATAATAATGATCAGTGCTGTTATTATTATTGTTACCCTGCTTCTGGTCAGGAAATTGTTCCTCTTCCTCTTCATCATCATCAGCAGCAACAAAATAATGCTTCATCATCATCATTATCAGTTTTTGAGACCTTACCAGAGCTACCATTGTCTCAGTGTTGCATCATCCAAGGTGATAATGAAGTAGGCACTACTACTACCATTGATGGTGCTGCTGCTTTGAAACATTGGCCACCTCCTTATTAG 600 0.4 MDCNTITCASIEEQGSSINKRKKKGSNGSMNNNNNNTKKKNKGVMKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKAQIWLHQTLMMNYDHDNVDNNNNNDQCCYYYCYPASGQEIVPLPLHHHQQQQNNASSSSLSVFETLPELPLSQCCIIQGDNEVGTTTTIDGAAALKHWPPPY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60609g00011 199 Gene3D - 51 105 IPR036638 GO:0046983
Stsc60609g00011 199 CDD bHLH_AtIND_like 48 108 - -
Stsc60609g00011 199 SMART finulus 53 102 IPR011598 GO:0046983
Stsc60609g00011 199 MobiDBLite consensus disorder prediction 14 57 - -
Stsc60609g00011 199 FunFam Transcription factor LAX PANICLE 50 113 - -
Stsc60609g00011 199 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 37 155 IPR045843 GO:0003700|GO:0006355
Stsc60609g00011 199 MobiDBLite consensus disorder prediction 14 48 - -
Stsc60609g00011 199 Pfam Helix-loop-helix DNA-binding domain 57 96 IPR011598 GO:0046983
Stsc60609g00011 199 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Stsc60609g00011 199 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60609g00011 Stsc-Chr60609 68284 69073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60609g00011 38 115 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 53.846 1.10e-22 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60609g00011 HLH 7.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60609g00011 - - adu:107475363 214.157