Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60608g00006 ATGCACTCCCGGGGTTTTCTGCACCGTGATATAAAACCCGACAACTTTTTAATGGGTTTGGGCCGCAAGGCAAATCAGGTTTACATAATTGATTATGGTCTTGCAAAAAAGTATCGTGATCTTCAAACCCATAAGCATATACCATACAGGGAAAACAAAAACCTTACTGGAACTGCTCGTTATGCAAGTGTTAATACTCATCTTGGAGTTGAACAAAGCAGAAGAGATGATCTAGAATCACTTGGCTATGTGCTCATGTACTTCCTGAGAGGAAGTCTCCCTTGGCAAGGGTTGAAAGCTGGCACTAAGAAGCAGAAGTATGACAAGATAAGTGAAAAGAAGATGCTTACTCCAATAGAGGTCTTGTGTAAATCACACCCACTGGAATTCACATCCTACTTTCACTACTGCCGTTCACTACGTTTTGAAGATAAGCCTGATTATTCATATCTTAAGAGACTCTTCCGTGACCTATTCATACGAGAAGGTTATCAGTTTGACTATGTATTTGACTGGACTATATTGAAGTATCCACAAATTGGATCCAGTTCAAGAACTCGACTAACCGGGAAGCCAGCCGTAAACCCAGGACTGTCAGGAGATAGATTAGATCGACCTTCAGGTGGGCCAGAGATTCGGGAAAGATTGTCAGGTGCAGTTGAGGCATTTGCAAGAAGGAATGGCTCTGGACTAAATCTGCATAGGTCTTCAGATGATGTGCCATCTTCCAAAGATGTTCTAGCTGATTCGGAGAGAACTCGTAGCTCTTCTCGCAATGGCAGTGCCTCAAAAAGGCCCGTTGTTTCGAGCAGCCGGCCAAGTTCTTCTGGTGAGCCTAGTGAGAACCGTTCAAGTCGGCTGCTAGCAAGCAGCAGCCGTCTATCTACCACTCAGAGGATTCAACCAGGTCTGGAGTCCAAAACATCCTTCACCCGTGCATCGGGGACAAGGGGAGGCCGTGATGACACACTCAGGAGCTTTGAACTCCTGTCAATTGGTACTGGAAAAAGGAAATGA 1017 0.4503 MHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPIEVLCKSHPLEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSRTRLTGKPAVNPGLSGDRLDRPSGGPEIRERLSGAVEAFARRNGSGLNLHRSSDDVPSSKDVLADSERTRSSSRNGSASKRPVVSSSRPSSSGEPSENRSSRLLASSSRLSTTQRIQPGLESKTSFTRASGTRGGRDDTLRSFELLSIGTGKRK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60608g00006 338 FunFam Casein kinase I isoform alpha 48 201 - -
Stsc60608g00006 338 MobiDBLite consensus disorder prediction 230 325 - -
Stsc60608g00006 338 MobiDBLite consensus disorder prediction 238 252 - -
Stsc60608g00006 338 PANTHER CASEIN KINASE-RELATED 1 285 - -
Stsc60608g00006 338 MobiDBLite consensus disorder prediction 184 212 - -
Stsc60608g00006 338 MobiDBLite consensus disorder prediction 253 316 - -
Stsc60608g00006 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 6 18 IPR008271 GO:0004672|GO:0006468
Stsc60608g00006 338 Gene3D Transferase(Phosphotransferase) domain 1 1 195 - -
Stsc60608g00006 338 SUPERFAMILY Protein kinase-like (PK-like) 1 172 IPR011009 -
Stsc60608g00006 338 ProSiteProfiles Protein kinase domain profile. 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60608g00006 338 Pfam Protein kinase domain 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60608g00006 Stsc-Chr60608 47527 50937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60608g00006 1 117 AGC Kinase Gene Family AT3G08720 31.933 3.71e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Stsc60608g00006 Pkinase 6.6e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60608g00006 K08960 - cave:132177205 569.696