Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60608g00005 ATGGAAAGTGCAAGGTGCTGGTTTAATAGGTTCAAGTCAAAAGATAAAGTGCCATCATCAAAAAATAAGGATACTACAAGCTCCAGAAAAGAAGGGTCAAGACCTCCAACAAATGAAGAAGCACCTTCTAGTGCAACCAAGCAGAAGGTTGCAGCTGCAAAACAGTTCATAGAAAACCATTATAAAAAGCAGATGAAGGATCTGCAGGAGAGAAAGGAACGACGTAATATGCTTGAAAAGAAATTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAATAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGGGAATACATGCGCCTTCAGAGGCATAAGATGGGGGCTGATGATTTTGAACCCCTGACTATGATAGGGAAGGGTGCGTTTGGAGAGGTCAGAATCTGCCGTGAGAAAGCAACTGGTCATGTATATGCTATGAAGAAACTCAAGAAATCAGAGATGCTTCGCAGAGGACAGGTTGAACATGTTAAAGCCGAGAGGAACTTACTCGCAGAAGTTGACAGCAATTGCATTGTAAAGCTTTATTATTCCTTTCAAGATGAAGAGTACTTATATCTCATCATGGAGTATCTACCTGGCGGTGATATGATGACACTGCTCATGCGGAAGGATATACTGACAGAAGATGAGGCAAGGTTCTATGTTGGAGAGACTGTCCTTGCTATAGAGTCAATTCATAAACATAATTATATTCATCGGGATATCAAGCCCGACAATTTGCTGCTGGATAAAAATGGTCACATGAAATTATCTGATTNNNNNNNNNNTCTTCAGGAAACGGATTTCTCTATGGGAAATAACAGAAGTGGTGCCCTTCAGAGTGATGGACGTCCTGTGGCTCCTAAAAGAACTCAACAGGAGCAACTGCAGCATTGGCAGAAAAATAGGCGAACACTTGCCTATTCTACAGTTGGAACACCTGACTATATTGCCCCTGAGGTTTTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTAGTGGGATATCCACCCTTCTATTCCGATGAACCGATGTTGACTTGTAGAAAGATAGTAAATTGGAGAACTCATTTAAAATTTCCAGAAGAAGCTAAACTCTCACCTGAGGCAAAAGATCTTATTAGTCGACTTCTGTGTAATGTGGAACAGAGGCTTGGAACCAAAGGAGCTCATGAAATAAAGGCTCACCCATGGTTCGAAGGTATTGAGTGGGACAAGTTGTACCAAATTAAAGCTGCTTTTATTCCTGAGGTCAATGGTGAATTGGATACTCAAAATTTCGAAAAGTTTGAGGAGGGGGACAGCCAAAGTCAGCCTTCCTCAAAATCAGGCCCATGGAGAAAGATGCTGTCATCGAAGGACGTTAACTTTGTTGGCTATACATATAAGAACTTTGAAATTGTGAATGATGATCAACTGCCTGGAATTGCTGAGTTGAAGAAGAAGAACACAAAACCTAAAAGGCCATCTATTAGGACCCTATTTGACGACGAATCAGCTATGGCTGCGAATCAACCTGGCCAAGGGAGCTTCTTAAAACTCTTACCTACTCAACCAGAAGTTCCTGAAAAGAGTGAATACCAATGA 1623 0.411 MESARCWFNRFKSKDKVPSSKNKDTTSSRKEGSRPPTNEEAPSSATKQKVAAAKQFIENHYKKQMKDLQERKERRNMLEKKLADAEVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFEPLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYYSFQDEEYLYLIMEYLPGGDMMTLLMRKDILTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDXXXXLQETDFSMGNNRSGALQSDGRPVAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRTHLKFPEEAKLSPEAKDLISRLLCNVEQRLGTKGAHEIKAHPWFEGIEWDKLYQIKAAFIPEVNGELDTQNFEKFEEGDSQSQPSSKSGPWRKMLSSKDVNFVGYTYKNFEIVNDDQLPGIAELKKKNTKPKRPSIRTLFDDESAMAANQPGQGSFLKLLPTQPEVPEKSEYQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60608g00005 540 SMART pkinase_C_6 412 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc60608g00005 540 MobiDBLite consensus disorder prediction 1 58 - -
Stsc60608g00005 540 Pfam Protein kinase domain 121 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60608g00005 540 FunFam Non-specific serine/threonine protein kinase 310 429 - -
Stsc60608g00005 540 FunFam Non-specific serine/threonine protein kinase 203 265 - -
Stsc60608g00005 540 MobiDBLite consensus disorder prediction 492 506 - -
Stsc60608g00005 540 ProSiteProfiles AGC-kinase C-terminal domain profile. 412 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Stsc60608g00005 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Stsc60608g00005 540 SMART serkin_6 119 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60608g00005 540 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524
Stsc60608g00005 540 CDD STKc_NDR_like 117 475 - -
Stsc60608g00005 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 27 463 - -
Stsc60608g00005 540 Pfam Protein kinase C terminal domain 430 474 IPR017892 GO:0004674|GO:0005524|GO:0006468
Stsc60608g00005 540 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Stsc60608g00005 540 Coils Coil 61 95 - -
Stsc60608g00005 540 CDD MobB_NDR_LATS-like 53 114 - -
Stsc60608g00005 540 Gene3D Transferase(Phosphotransferase) domain 1 203 429 - -
Stsc60608g00005 540 Gene3D Phosphorylase Kinase; domain 1 117 440 - -
Stsc60608g00005 540 MobiDBLite consensus disorder prediction 492 540 - -
Stsc60608g00005 540 MobiDBLite consensus disorder prediction 7 36 - -
Stsc60608g00005 540 SUPERFAMILY Protein kinase-like (PK-like) 94 464 IPR011009 -
Stsc60608g00005 540 ProSiteProfiles Protein kinase domain profile. 119 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60608g00005 Stsc-Chr60608 36212 41279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60608g00005 1 538 AGC Kinase Gene Family AT3G23310 79.015 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc60608g00005 Pkinase 1.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60608g00005 K08790 - gmx:100805439 995.727