Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60608g00001 ATGGGGCAAGGGCAATCCAAGGGCGAATTGCTCTATCAGCAGGTCAGTTATGGAAACGTAGAAGGAATCAAAGCCCTTCACAGAGAAGGTGCAGGCCTCGAGTGGATAGACAGAGAAGGAAAAACCCCCTTGATTGTTGCATGTATGAATCCTGAGCTTTATAATGTTACCAAAACTTTGATAGAACTTGGAGCCAATGTCAATGCATACCGTCCAGGTCGTCATGCGGGGACTCCGCTGCATCATGCTGCTAAAAGGGGGCTCGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCAAATCCTTTGATCTTGAATGATGATTGTCAAACTGCCGTTGAGGTTGCCAGGGCCAAAGGGCACACCAATGTCGTTAGGGCAATTGAGAGTCATCTATGCTTGTTCTCTGGTTGGATGCGAGAATTCCATGGACCTGGGTTTCTAGAAGTAGTAGCTCCTCAGTTGGTATCTAGAAGAGTTTGGGTGGTTGTTTTACCAGTTGGCGCTCGTAATCCTACCAGACCTTACAAGTTGGAGCTTGCTATATATTCTACTTTGCAGGATGCACGACCACGAACATTGATTCCTCTGTGGAGGGCCAATTTAGAAGAACCAAAGCTTCACCAGTCTGATCCATCTGTGACAATTGCCGATATGACTTCCCGAACACGGATTAAACTTGCATCTGCTAAAGAGAATGACAGGCATCAACTTGCATTGTTTTCTATCGCTTGCAAAGGAATTCCACGGGCAAGTCCCCCATTTTTGCATAGTAATGTGCCTCCGGCCACAGCACCACCATCTGCAGAAGAAGATGATGCAGAGCTGGCTATGGCCATCAGTGCATCCCTGCAGGCCATTCAGGAGAGACCATCTTTTCCAGCTGCCCAGCCAGACTCCGGAGCAAGCACTTCAAGCGGCGGAGCAAACGGAAGCAAACTAGGTTTTCTGGGCACACAAAATCCAAACACAAGTGGAAGTGAGTCTGTACAGGAAGTCCATGAAAATGCTTCTGCTGGTTACATTGCCAGCGGTCTTGATTTCGATCCATCGGCTCCACCAGCCCCTCCGACTGATGATGATATTCCGGTGGGCGGCCCCATTCAGTACCCTTCAATCGACATAAGCCCCGTGGACATGTCATCGCCAGTTGTTGAGAACACACCGAAAGTTGAAGAAGGCAAAAATGGCGGAGGAAGTGGCTCGTCATGTGTGATATGTCTGGATGCACCGGCAGAAGGGGCATGCATACCATGTGGTCATGTGGCTGGATGCATGTCGTGCTTGAATGAGGTCAAGACAAAGAAATGGGGTTGCCCGGTATGTCGAGCGAAGATAGACCAGGTGATAAAGCTGTACCATGTTTGA 1368 0.4854 MGQGQSKGELLYQQVSYGNVEGIKALHREGAGLEWIDREGKTPLIVACMNPELYNVTKTLIELGANVNAYRPGRHAGTPLHHAAKRGLESIVKLLLLHGANPLILNDDCQTAVEVARAKGHTNVVRAIESHLCLFSGWMREFHGPGFLEVVAPQLVSRRVWVVVLPVGARNPTRPYKLELAIYSTLQDARPRTLIPLWRANLEEPKLHQSDPSVTIADMTSRTRIKLASAKENDRHQLALFSIACKGIPRASPPFLHSNVPPATAPPSAEEDDAELAMAISASLQAIQERPSFPAAQPDSGASTSSGGANGSKLGFLGTQNPNTSGSESVQEVHENASAGYIASGLDFDPSAPPAPPTDDDIPVGGPIQYPSIDISPVDMSSPVVENTPKVEEGKNGGGSGSSCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYHV 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60608g00001 455 MobiDBLite consensus disorder prediction 293 365 - -
Stsc60608g00001 455 Gene3D - 3 188 IPR036770 -
Stsc60608g00001 455 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Stsc60608g00001 455 SMART ANK_2a 39 69 IPR002110 GO:0005515
Stsc60608g00001 455 SMART ANK_2a 75 104 IPR002110 GO:0005515
Stsc60608g00001 455 Pfam Zinc finger, C3HC4 type (RING finger) 402 449 - -
Stsc60608g00001 455 SUPERFAMILY Ankyrin repeat 10 133 IPR036770 -
Stsc60608g00001 455 MobiDBLite consensus disorder prediction 297 334 - -
Stsc60608g00001 455 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Stsc60608g00001 455 PANTHER ROLLING PEBBLES, ISOFORM B 397 453 - -
Stsc60608g00001 455 ProSiteProfiles Zinc finger RING-type profile. 404 443 IPR001841 -
Stsc60608g00001 455 SMART ring_2 404 442 IPR001841 -
Stsc60608g00001 455 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 271 290 IPR003903 -
Stsc60608g00001 455 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Stsc60608g00001 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 454 IPR013083 -
Stsc60608g00001 455 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Stsc60608g00001 455 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Stsc60608g00001 455 CDD RING-HC_XBAT35-like 404 453 - -
Stsc60608g00001 455 SUPERFAMILY RING/U-box 403 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60608g00001 Stsc-Chr60608 2846 8710 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60608g00001 394 452 C3H Transcription Factor Family AT3G06140 33.898 6.29e-09 55.8