Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60606g00005 ATGAGGGAAGAAGATTCAAACTGGTTCGCAAGATGGGAAGATGAACTGCCTCCGCCGGAGGAACTCATGCCTTTATCGCAAACCCTAATCACACCCGATCTTGCCATCGCCTTCGACATCCCCAGCCCTCACACCCNNNNNNNNNNTCCAACCACCCCCAACCACCATCTCCACCACCACCAACAACCACAGCAACCACAACCACCTTCAAACCCTTCCCCCTCGCATCAGCAACAACCCTCCTCCGGTGGCGACTTCGCCGATTCCGGCGATCTCGGCTCCGGCGCCGCCGGCGAGGAGCCCGCAAGAACCCTCAAGAGGCCTCGGCTAGTTTGGACCCCGCAGCTCCACAAGCGCTTCGTCGACGCCGTTGCACACCTCGGAATCAAGAACGCCGTTCCGAAGACCATAATGCAGCTCATGAGCGTTGACGGATTAACTCGCGAGANNNNNNNNNNTAGCCATCTCCAGAAGTACCGCCTCTACCTCAAGCGCATGCAGGGGCTCTCCGCCGCCGGACCCGGCGGCGGCGGAGCCGGTAGTGGTGGATCCGATGCCGCCACCGATCACCTCTTCGCCAGCTCCCCTGTGCCGGCGCATTTCCTCCACCCGGCTGCTGCGGCAGCGGGTGGGAGGCCTAATTCGGAGCATTTCCTGCCGTTTGTGCCGGTTCCGGCGATGCACCACCAGCAACACCACCACCAGATGGCTGCCGCAGCTGCCGGTGCTGCTGCGATGCAGCACGCTCAGCTGCAGCAGCAGTTCCATAGGCAGGCGGCCGGGCATTTTGGGTCGCCGCCGAATGGGCACTTTGAGCATGCTTTCTTGTCAAGGCAGCAGCAGCAGCCGCAGAATCAGCAGCAGCAGTTCAATAGAATGGGTGGAGGTGTGTCTGGATATGTAGAAGACATAGAATCTGCTAATGCATCTGGTGGAAGGAAGGTTCTTACTCTTTTTCCAACCGGAGATGATTGA 975 0.5856 MREEDSNWFARWEDELPPPEELMPLSQTLITPDLAIAFDIPSPHTXXXXPTTPNHHLHHHQQPQQPQPPSNPSPSHQQQPSSGGDFADSGDLGSGAAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTREXXXXSHLQKYRLYLKRMQGLSAAGPGGGGAGSGGSDAATDHLFASSPVPAHFLHPAAAAAGGRPNSEHFLPFVPVPAMHHQQHHHQMAAAAAGAAAMQHAQLQQQFHRQAAGHFGSPPNGHFEHAFLSRQQQQPQNQQQQFNRMGGGVSGYVEDIESANASGGRKVLTLFPTGDD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60606g00005 324 MobiDBLite consensus disorder prediction 1 106 - -
Stsc60606g00005 324 FunFam Two-component response regulator 103 167 - -
Stsc60606g00005 324 SUPERFAMILY Homeodomain-like 104 165 IPR009057 -
Stsc60606g00005 324 MobiDBLite consensus disorder prediction 274 294 - -
Stsc60606g00005 324 Gene3D - 104 167 - -
Stsc60606g00005 324 MobiDBLite consensus disorder prediction 1 18 - -
Stsc60606g00005 324 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 295 IPR044841 GO:0003700|GO:0006355
Stsc60606g00005 324 MobiDBLite consensus disorder prediction 171 190 - -
Stsc60606g00005 324 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 161 IPR006447 GO:0003677
Stsc60606g00005 324 MobiDBLite consensus disorder prediction 259 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60606g00005 Stsc-Chr60606 30792 33171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60606g00005 1 324 G2-like Transcription Factor Family AT3G10760 55.775 4.92e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc60606g00005 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60606g00005 - - aip:107623693 412.92