Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60606g00004 ATGCCTTCTTCGAGTTCCAACAAGAAGAAGCATTCCAAGTCAAAGAACGAAGCTGCTGCTTCTGCTGCACCACCCCTTACTCCTCCTCGAACGCCGTCGCGCCCCGACGTCGACGCCGACCTCTGCCTTCCAGAAGCTTCTCGAAGGTACCCTTCCTTGATCGGACCATCTGCCTTCGTGGCCCAAGTCTCCGCCGTTGAAAATGGACCTAATTCGAGGCACTCCAGAATCTGGCTCTCGGAGCCTGCCATGGTTTCCTCTTCTCTTGCCCCTGGTACTCTTGTTTCGGTGTCAATTCCTTCATCAATTAAAACAAGTCTTCAAGTGAATCCTCTCCAGTCATTAGTTGATGAGTGTGTTAGTTGCTATGGCTTGGAAACTGGGAAGACGTTGAACGATGATGTCACGGGGAATTACTTTGTGCTTGCAACTGCTTTCCCTTCTACCAAGGTTTTGAAGAATGGGGTACGTCTGTCCTCAAATATTTCTTGTGCAATGGGATGTCCTCCTTTGGGTACAATAGTGTTTGTTTACCCAGTACAGAAACAGTACTTATCTGCTCTTGCAAATGGGAGCAATGAACTGCATTCTACAGAAAGTAATTGTCTCTCAGTATATAATTGCAAGGAATTGTATCTTCAGTTTTCTCCTCATCATGATGGATTTCAATTGGATACTAATAACTCAGCTTCTGTGGTGAAATCCCATGTCCAATCAAACAATGATATTTTTGCATCTCCTAGCACACCTTCTAATGGATCAAAGTTTTCTAATGCTAGTGTGTTGTCTTCTCCAAGATTTGAAGATTCAGCGTCAAGTATACCCATTCGGAATAGTCAATCTATGGCTTCGTTCAATGTTATGGATGCATTAGGAGATGAAAGTTCCAAAAAATTACTAGAGGCATGTGCAACTTCATGGTTATATTCTCGTTATTTACTGCTAGGTAATATTGTTTCTGTACCAATGTTTTCAGAAGTGTGCATTTTCCAAGTGATAGGAGCCAAAAAGGCACCAGCTTACAGAGCTGATAATTATTCATCAAATGGGATCAGTAATTTGTATCTTGAGGATTCTGATGTAGCAGAAAATGTGAATGAGGCAATATTTGTCAATTGTGAAACAAAGGTATTTTTATCTTTGCAATCAAATGCAGCATCTGAAGAACCAAGTCAAACAGATTTATCCAGTGAAAAATGTAAAGCAAAGGTTGCTAATCCTAGCATATATGATAATATTTCCAAACTGGGTGGTCTATCTAAAGAATATACAGTTTTAAAGGATATAATTTCTTCATCAGTAAAAGATGTTTTGTCAAGTTTTGGTTTATGTTCCACAAGAGGAGTTCTTCTACATGGTCCACCTGGTACAGGGAAGACTTCCCTGGCTCAGTTATGTGCTCGTGATGTTGGGGTAAAATTGTTTCAAGTAAATGGACCTGAAATTGTTACCCAATATTTTGGGGAAAGTGAGCAAGCATTGCATGATGTTTTTGATTCAGCAGTTCAAGCTGCACCTGCTGTGGTATTTATTGATGAATTAGATGCAATTGCCCCTGCAAGAAAAGATGGAAGTGAAGAGTTATCTCAAAGAATGGTTGCAACATTGTTGAATTTGATGGATGGAATTAGTAGAACTGAAGGGTTACTTGTAATTGCTGCCACCAACCGGCCTGATCATATTGAGCCGGCTCTCAGACGACCTGGAAGATTTGACAAAGAAATCGAAATTGGTGTGCCATCCCCAAAACAACGCTTGGATATTTTGTTCACTCTTCTTTGTAGAGTGGATCACTCTCTCTCAGATTTACAAGTTGAACACCTTGCCACTGCCACTCATGGTTTTGTGGGTGCTGATCTGGCTGCCCTTTGCAATGAGGCAGCACTGATTTGTCTAAGACGTTATGCTAATTTAAAGAAGATTTGTGATGATGCTTCCAATGATGTAACGGAGCAACCCAAATTGCGGAATGGCGAAACAAACTCGAGAGATCAATCAGGTATTGCAACTTCATCTGTTTCAGAATCAGATATATCAGTGGCCTCGAATGCTGTATTACATCACTGTATGACAGAAACAACTTCGGAATCTATGGAAATAATTTCTGATAGTGGTGATAAAGACCACAATTTGAAAGTGAGTTTTGAAGATTTTCAGAAGGCCAGAATGAAAATAAGACCCAGTGCAATGAGAGAGGTAATCCTTGAGGTTCCAAAGGTCAATTGGGAAGATGTGGGTGGCCAAAATGAAGTCAAAGCTCAGTTGATGGAAGCTGTAGAGTGGCCCCAGAAGCACCGCGATGCATTCAACCGTATTGGGACTCGCCCTCCTACAGGCGTATTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCATGGCACGAGCAGTTGCTTCTGAAGCTGGGCTGAACTTCTTAGCTGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCAGAGAAGGCTGTCAGATCATTGTTTGCAAAAGCAAGGACCAATGCACCATCCATTGTATTTTTTGATGAAATTGATAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCGTCAGAGAGTAAATGTCACTGTCATAGCTGCTACAAATAGGCCAGATAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGATCGCCTGCTTTATGTTGGACCTCCAAATGAGAGAGACAGAGAAGATATATTTCGCATTCATTTGCATAAAATTCCATGTGATGGTGATGTTAGCATTAAAGAACTTGCTTGCCTCACAGATGGTTATACTGGAGCTGATATATCACTAATATGTCGAGAGGCAGCTGTTGCAGCAATTGAGGAGAACCTTGGTGCTTCAGTTATAACAATGAAGCATTTGAAGAAGGCAATCAATCAGGGCCAGCCATCTGAAGTACAGTCCTACCAGAAGCTGTCAGCAAAGTTTCAAAGGGCTGTTCGTAGCTGTGATATAAATGAAGTTGATCACATGCCACACAAAAGTGGATATACTTCCTTCAACATTCGGAAGGTCCTAAAATCTTGCGCATTGTTCCTCCCTATTCCAGCAGTCATTCTTTATTTGCGGACGGCACGAAGTGGTTAA 3159 0.4191 MPSSSSNKKKHSKSKNEAAASAAPPLTPPRTPSRPDVDADLCLPEASRRYPSLIGPSAFVAQVSAVENGPNSRHSRIWLSEPAMVSSSLAPGTLVSVSIPSSIKTSLQVNPLQSLVDECVSCYGLETGKTLNDDVTGNYFVLATAFPSTKVLKNGVRLSSNISCAMGCPPLGTIVFVYPVQKQYLSALANGSNELHSTESNCLSVYNCKELYLQFSPHHDGFQLDTNNSASVVKSHVQSNNDIFASPSTPSNGSKFSNASVLSSPRFEDSASSIPIRNSQSMASFNVMDALGDESSKKLLEACATSWLYSRYLLLGNIVSVPMFSEVCIFQVIGAKKAPAYRADNYSSNGISNLYLEDSDVAENVNEAIFVNCETKVFLSLQSNAASEEPSQTDLSSEKCKAKVANPSIYDNISKLGGLSKEYTVLKDIISSSVKDVLSSFGLCSTRGVLLHGPPGTGKTSLAQLCARDVGVKLFQVNGPEIVTQYFGESEQALHDVFDSAVQAAPAVVFIDELDAIAPARKDGSEELSQRMVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSPKQRLDILFTLLCRVDHSLSDLQVEHLATATHGFVGADLAALCNEAALICLRRYANLKKICDDASNDVTEQPKLRNGETNSRDQSGIATSSVSESDISVASNAVLHHCMTETTSESMEIISDSGDKDHNLKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQNEVKAQLMEAVEWPQKHRDAFNRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARTNAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLRQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNERDREDIFRIHLHKIPCDGDVSIKELACLTDGYTGADISLICREAAVAAIEENLGASVITMKHLKKAINQGQPSEVQSYQKLSAKFQRAVRSCDINEVDHMPHKSGYTSFNIRKVLKSCALFLPIPAVILYLRTARSG 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60606g00004 1052 Pfam AAA+ lid domain 934 980 IPR041569 -
Stsc60606g00004 1052 Pfam AAA+ lid domain 602 636 IPR041569 -
Stsc60606g00004 1052 MobiDBLite consensus disorder prediction 651 674 - -
Stsc60606g00004 1052 FunFam spermatogenesis-associated protein 5-like protein 1 913 995 - -
Stsc60606g00004 1052 Pfam ATPase family associated with various cellular activities (AAA) 449 578 IPR003959 GO:0005524|GO:0016887
Stsc60606g00004 1052 Pfam ATPase family associated with various cellular activities (AAA) 780 911 IPR003959 GO:0005524|GO:0016887
Stsc60606g00004 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 636 IPR027417 -
Stsc60606g00004 1052 MobiDBLite consensus disorder prediction 1 39 - -
Stsc60606g00004 1052 Gene3D - 401 580 IPR027417 -
Stsc60606g00004 1052 CDD RecA-like_CDC48_r2-like 751 910 - -
Stsc60606g00004 1052 MobiDBLite consensus disorder prediction 649 674 - -
Stsc60606g00004 1052 FunFam calmodulin-interacting protein 111 isoform X1 737 912 - -
Stsc60606g00004 1052 CDD RecA-like_CDC48_NLV2_r1-like 415 577 - -
Stsc60606g00004 1052 SMART AAA_5 445 581 IPR003593 GO:0016887
Stsc60606g00004 1052 SMART AAA_5 776 914 IPR003593 GO:0016887
Stsc60606g00004 1052 ProSitePatterns AAA-protein family signature. 882 900 IPR003960 GO:0005524|GO:0016887
Stsc60606g00004 1052 PANTHER AAA-FAMILY ATPASE 246 1002 - -
Stsc60606g00004 1052 Gene3D - 581 739 - -
Stsc60606g00004 1052 FunFam Calmodulin-interacting protein 111 580 740 - -
Stsc60606g00004 1052 Gene3D - 913 1001 - -
Stsc60606g00004 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 738 994 IPR027417 -
Stsc60606g00004 1052 Gene3D - 740 1006 IPR027417 -
Stsc60606g00004 1052 FunFam Putative vesicular transport protein (CDC48) 400 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60606g00004 Stsc-Chr60606 19687 26656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60606g00004 1 1037 Calmodulin-binding Proteins AT3G56690 55.524 0.0 1015
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60606g00004 - - gmx:100788600 1424.07