Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60606g00003 ATGGCTTCAAGACCCATCGTTCCTCAACAAGCAAGAGGGGATGCAGTGGTGGGAGGAGGGAAGCAGCAACAGCAGCAGAAGAAGATCGGGGCCGGAAACCGCAAAGCCCTCGGTGAGATCGGAAATTTGGTCACTGTTAGAGGTGTAGAGGTCAAGCCTAATCGCCCCATTACAAGGAGTTTCTGTGCACAACTTCTTGCCAATGCACAAGCAGCAGCGGCAGCTGAAAACAACAAGAAACAGGTATGTGCTAATGTGGGTGGACCTGCTCCTGAAGGAGTCGCAGTTGCGGCAAAAAGGGGTGCACCAAAGCCTGCTGCTCACAAGAATGTAACTGTAAAACCAAAACCTGCAGTGGTGGAAGTCATTGACATAAGCCCTGACAAGGAGGTACCAAAGGACAAGCCTGTGAACAAGAATAAAAAGGAAGCAGCAGATGCCAACTCCAAGAAGAAATCACACACACTTACTTCAGTCCTCACAGCCAGAAGCAAGGCAGCATGTGGTATAACTAAGAAACCAAAGGAGCAGATTATTGACATCGATGCAGCTGATATAGAGAATCATCTTGCTGCTGTTGAATACATTGAAGACATCTACAAGTTCTATAAGGAAGTTGAGAATGAGAGCCGTCCACATGATTACATAGACTCACAACCAGAGATCAATGAAAAGATGAGAGCCATATTGGTTGATTGGCTCACAGATGTGCACACCAAGTTTGAACTCTCTACTGAGACACTTTATCTGACCATCAACATCATTGATAGGTTCTTAGCAGTGAAGACTGTGCCAAGGAGGGAACTCCAATTGGTTGGGATCAGTGCCATGCTCATGGCATCCAAGTATGAAGAAATCTGGCCCCCGGAGGTGAATGACTTTGTGTGCCTCTCAGATAGAGCTTACACTCATGAACAGATTCTTGTCATGGAGAAACTCATATTGGGGAAGCTGGAATGGACTTTGACTGTGCCTACACCATTTGTTTTCCTCGTTCGTTTCATCAAGGCTTCAGTTCCAGATCAGGAGCTGGAGAACATGGCACACTTTCTGTCTGAGTTGGGAATGATGCATTATGCAACCTTAATGTACTGTCCATCAATTTTTGCGGCCTCAGCAGTATTTGCAGCTAGATGCACACTTAATAAGACACCCCTTTGGAGTGACACACTTAAGCTACACACTGGTTACACACAAGAACAACTTATGGATTGTGCTAGGCTACTAGTGAGTTTTCACTCGAATGCTGGGAATGGGAAGTTGAAGGTTGTGTACAGAAAATACTCAGATCCACAGAAAGGTGCAGTTGCTGTGCACCCACCTGCTAAATATCTTCTCCCTGAAGCTTCTTCTGCCTCTTCTGGCTCTACATATTGA 1377 0.459 MASRPIVPQQARGDAVVGGGKQQQQQKKIGAGNRKALGEIGNLVTVRGVEVKPNRPITRSFCAQLLANAQAAAAAENNKKQVCANVGGPAPEGVAVAAKRGAPKPAAHKNVTVKPKPAVVEVIDISPDKEVPKDKPVNKNKKEAADANSKKKSHTLTSVLTARSKAACGITKKPKEQIIDIDAADIENHLAAVEYIEDIYKFYKEVENESRPHDYIDSQPEINEKMRAILVDWLTDVHTKFELSTETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEQILVMEKLILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMAHFLSELGMMHYATLMYCPSIFAASAVFAARCTLNKTPLWSDTLKLHTGYTQEQLMDCARLLVSFHSNAGNGKLKVVYRKYSDPQKGAVAVHPPAKYLLPEASSASSGSTY 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60606g00003 458 SMART cyclin_7 329 411 IPR013763 -
Stsc60606g00003 458 SMART cyclin_7 232 316 IPR013763 -
Stsc60606g00003 458 FunFam G2/mitotic-specific cyclin-1 320 437 - -
Stsc60606g00003 458 SUPERFAMILY Cyclin-like 187 322 IPR036915 -
Stsc60606g00003 458 CDD CYCLIN_AtCycB-like_rpt1 175 320 - -
Stsc60606g00003 458 Gene3D - 198 437 - -
Stsc60606g00003 458 MobiDBLite consensus disorder prediction 126 153 - -
Stsc60606g00003 458 SMART Cyclin_C_2 325 442 IPR004367 -
Stsc60606g00003 458 Gene3D - 212 323 - -
Stsc60606g00003 458 Pfam Cyclin, C-terminal domain 325 441 IPR004367 -
Stsc60606g00003 458 MobiDBLite consensus disorder prediction 126 150 - -
Stsc60606g00003 458 FunFam G2/mitotic-specific cyclin 211 319 - -
Stsc60606g00003 458 MobiDBLite consensus disorder prediction 1 31 - -
Stsc60606g00003 458 Pfam Cyclin, N-terminal domain 198 322 IPR006671 -
Stsc60606g00003 458 PIRSF Cyclin_A_B_D_E 1 454 IPR046965 GO:0016538|GO:0044772
Stsc60606g00003 458 SUPERFAMILY Cyclin-like 324 444 IPR036915 -
Stsc60606g00003 458 ProSitePatterns Cyclins signature. 227 258 IPR006671 -
Stsc60606g00003 458 CDD CYCLIN_AtCycB-like_rpt2 325 441 - -
Stsc60606g00003 458 PANTHER CYCLINS 150 434 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60606g00003 Stsc-Chr60606 16781 19394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60606g00003 1 403 Core Cell Cycle Gene Families AT3G11520 57.143 5.52e-150 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60606g00003 K21777 - gmx:547919 647.506