Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60605g00005 ATGTCAAGCACAGATGGTGGTGCAGACAACGCAGGAATTTATGCAGCTATCATCGTTGTTGGGGTAATGGTGAAAGTAGCCATTGTAGTTTGTGTATGCCATCAAAGGTTTAAGAATCAAGGTGGACCAGTTCGTCCAGCCATACCTTTCTTGACAATCACCATTGATAAGTTCTTGAATGATATTGAAAGGGAGAAGCCTATCAGATTCACTGATCAGCAGCTACGCATTGCCACTGATAACTACTCCAATCTGTTGGGATCAGGAGGATTTGGTGCAGTTTACAAAGGAATCTTCAGCAACGGCACAATTGTAGCTGTGAAGGTTCTCTATGGAAGTTCTGACAAAAGAATTCAAGAGCAGTTCATGGCTGAAATGGGAACACTTGGTAGGATCCACCATTTCAATCTTGTACGGCTCTATGGGTTTTGTTTAGAGAGGAACTTGATAGCACTGGTTTATGAGTACATGGGAAATGGATCTCTTGACAGGTATCTGTTCAAGGAAATTAAGGCTTTGGAGTTTGAAAAGCTTCATGAGATTGCGGTTGGAACAGCAAGAGGGATTGCTTATTTGCATGAAGAGTGCCAACAGAGAATAATCCATTATGATATAAAACCAGGGAATATTCTCTTGGACATGAATTTCAATCCTAAAGTTGCGGATTTTGGTTTGGCTAAGCTTTGTAACAGGGATAATACTCATGTAACCATGACCGGAGGCAGGGGAACTCCCGGTTATGCCGCGCCGGAGCTTTGGATGCCGTTTCCTGTCACTCACAAATGTGATGTTTACAGCTTTGGCATGTTGTTATTTGAAATCATAGGCAGGAGAAGAAACGTAGACACAAATCTTTCGGAAAGCCAAGAATGGTTTCCAATGTGGGTTTGGAAGAAATATGATGCTGGAGAGTTGGGGGATTCGAAAATAGTGGTGGGGATGGAGGAGAAGCATAAGGAAATGACAGAGAGGATGGTTAAGGTAGCTCTGTGGTGTGTCCAATATAGGCCAGAAGTAAGGCCTGATATGAGTGTTGTGGTGAAAATGTTGGAAGGTTCAATGGAGATTCCAGAACCATTAATGAATCCATTTCAACACATGATTGGCGGTACTGTTGTTGCTCACCCAGTACAAGTTTCACAGGGATATACTGAAAGCAGTAGCATGTATACTGGATCTTCTATTGTGGTAACTGACTCAAGCATTGTGTGTGCAACTCCTATTATGCACAAGTATGAGATTGAATTAGCCTCTAGTAGAGGCTGA 1266 0.4242 MSSTDGGADNAGIYAAIIVVGVMVKVAIVVCVCHQRFKNQGGPVRPAIPFLTITIDKFLNDIEREKPIRFTDQQLRIATDNYSNLLGSGGFGAVYKGIFSNGTIVAVKVLYGSSDKRIQEQFMAEMGTLGRIHHFNLVRLYGFCLERNLIALVYEYMGNGSLDRYLFKEIKALEFEKLHEIAVGTARGIAYLHEECQQRIIHYDIKPGNILLDMNFNPKVADFGLAKLCNRDNTHVTMTGGRGTPGYAAPELWMPFPVTHKCDVYSFGMLLFEIIGRRRNVDTNLSESQEWFPMWVWKKYDAGELGDSKIVVGMEEKHKEMTERMVKVALWCVQYRPEVRPDMSVVVKMLEGSMEIPEPLMNPFQHMIGGTVVAHPVQVSQGYTESSSMYTGSSIVVTDSSIVCATPIMHKYEIELASSRG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60605g00005 421 Gene3D Phosphorylase Kinase; domain 1 55 156 - -
Stsc60605g00005 421 Gene3D Transferase(Phosphotransferase) domain 1 157 358 - -
Stsc60605g00005 421 FunFam Putative receptor-like protein kinase 157 358 - -
Stsc60605g00005 421 SUPERFAMILY Protein kinase-like (PK-like) 65 351 IPR011009 -
Stsc60605g00005 421 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00005 421 Pfam Protein tyrosine and serine/threonine kinase 84 350 IPR001245 GO:0004672|GO:0006468
Stsc60605g00005 421 ProSitePatterns Protein kinases ATP-binding region signature. 86 108 IPR017441 GO:0005524
Stsc60605g00005 421 SMART serkin_6 80 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00005 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Stsc60605g00005 421 CDD STKc_IRAK 86 352 - -
Stsc60605g00005 421 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 13 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60605g00005 Stsc-Chr60605 57701 59146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60605g00005 69 361 Receptor kinase-like Gene Family AT5G38280 41.883 2.25e-76 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc60605g00005 PK_Tyr_Ser-Thr 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60605g00005 - - gmx:100816921 651.358