Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60605g00003 ATGTTTTACTTCGCTGTGCCCAACACCGATAACTACACCAATTCCTTGGGGTCAGGAGGTTTCGGCAAAGTTTACAAAGGAATTTTCAACGGCCTCATGATAGTTGTTAAGGTCCTCCATGGAAATTATTCTGACAAGAGAATTCAAGAACAGTTCATGGCTGAAATTGGAACACTTGGTAAAATCCACCATTTCAATCTTGTTCGGTTATATGGCTTCTGTTTTGAAGAAAACCTGACAGCATTGGTTTATGAGTACATGGAAAATGGTTCTCTTGACAAGTATTTGTTCAAAGAAAACAATGTTTTAGGGTTTGAAAAGCTTCATGACATAACGGTTGGAATAGCAAAAGCCATTGCTTATTTTCATGAAGAGTGCCAACAAAGAATTATTCACTATGATATTAAACCGGAAAATATTTTATTGGACCGGAATTTCAATCCTAAGATTGCAGATTTTGCCGCGCCGGAGCTATGGCTGCCGTTCCCGGCGACTCACAAGTGCGATGTTTATAGCTTTGGAATGTTGTTGTTTGAGATTATTGGTAGGAGAAGAAATCTTGATACTAGTGTTTCGGAAGGGCAAGAGTGGTTTCCAATGTGGATTTGGAGAACATTTGATGGTGGAGAATTGTTACAAGAGTTAAGATTAGTGTGTGAATTATTGGAGGAGGAACATGAGGTGATGGGAGAGAGAATGGTGAAGGTAGGTTTGTGGTGTGTTCAGTATAGGCCTGAATCAAGGCCTATGATGAGTGCTGTTGTCAAAATGTTGGAAGGCTATGAAGAAATTCCAGAACCTTCGAATCCGTTTCAGTACTTGATGGACAATGGTTTTGGTGGTGTTCCACAGCAGCATTCATGGAATACCTGCAGTGGCACAACTACTACTGCAACTGCAAGTAGTTATATATTGTGA 918 0.4009 MFYFAVPNTDNYTNSLGSGGFGKVYKGIFNGLMIVVKVLHGNYSDKRIQEQFMAEIGTLGKIHHFNLVRLYGFCFEENLTALVYEYMENGSLDKYLFKENNVLGFEKLHDITVGIAKAIAYFHEECQQRIIHYDIKPENILLDRNFNPKIADFAAPELWLPFPATHKCDVYSFGMLLFEIIGRRRNLDTSVSEGQEWFPMWIWRTFDGGELLQELRLVCELLEEEHEVMGERMVKVGLWCVQYRPESRPMMSAVVKMLEGYEEIPEPSNPFQYLMDNGFGGVPQQHSWNTCSGTTTTATASSYIL 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60605g00003 305 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Stsc60605g00003 305 SMART serkin_6 10 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00003 305 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 155 IPR045874 GO:0004672
Stsc60605g00003 305 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Stsc60605g00003 305 SUPERFAMILY Protein kinase-like (PK-like) 9 260 IPR011009 -
Stsc60605g00003 305 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60605g00003 305 Gene3D Phosphorylase Kinase; domain 1 4 86 - -
Stsc60605g00003 305 Coils Coil 212 232 - -
Stsc60605g00003 305 Gene3D Transferase(Phosphotransferase) domain 1 87 154 - -
Stsc60605g00003 305 Gene3D Transferase(Phosphotransferase) domain 1 155 269 - -
Stsc60605g00003 305 Pfam Protein tyrosine and serine/threonine kinase 13 154 IPR001245 GO:0004672|GO:0006468
Stsc60605g00003 305 FunFam Os07g0541700 protein 87 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60605g00003 Stsc-Chr60605 52505 53515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60605g00003 9 273 Receptor kinase-like Gene Family AT5G38280 36.789 4.58e-61 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Stsc60605g00003 Pkinase 6.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60605g00003 - - gmx:100803355 391.734